PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO61486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 1277aa MW: 146106 Da PI: 7.0908 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 72 | 92 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +++ G+C +GdrC++ H+ OMO61486 72 VCTYWMS-GHCAFGDRCRYLHS 92 6*****9.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1277 aa Download sequence |
METKRAARRY ADDSVERICV RRTGLATSAN VYRRNSKPYN AISDNQPRKS SYHGPKTSYV 60 STPKARKQED KVCTYWMSGH CAFGDRCRYL HSWSCGDGFS SLAKLEGHKK AVSGIVLPLG 120 SDKLYSSSSD GTLRIWDCHS GKCARLSNLG DEVGSVYTEG RWMFIGMKNV VKAWNIETAE 180 EFSLKGPVGQ IFCMVVAKDM IIAGAQNGAI FAWKCSSEVN NPFQLVGSRK VHSRAVLCLT 240 VGENKLYSGS VDHTIRVWDI DTLQCIKTLN GHEDAVMSLL HCNGCLFSCS LDCSTKVWFA 300 AEGENWKVIY THKEEKGVLA LCGMNDAENK PVLFCSCNDK TVRLYDLPSF RTANFAFTER 360 GRTFSKEEVR VIYRGPYPLF FTGDASGSLT VWKWVVMEVI KDDSAEKNIC KRQRVSEEEL 420 DDRISSLPDN ILVHILSFLP IKDAVKTVLV PRFRNLWNFL PSLSFNQCGY HDCASKYDED 480 GPHYNEKFLN FVRHVLFLHE SATIDRFHLK FELNLDRTNE AAADEEDEEA RDYANRETMM 540 ASEVDSWIHF VMRKKVKVLN LDFKGCGLPE PTACYRLPNV VFGGKYLTEL KLVACEIKPS 600 HKIQLNCLKR LLLEELVLED KIINQILKGC SLLEELSLIR CYGLRRLATD NPNTKSLILD 660 LYYHGPMLQV LCPNVESLEI GGSIDLVDLV DVSSIAVSAV VFSSTFKCKH ERYQTLKALF 720 KKLSHGKIFI PCTWCILVFT IWQLIYQPGL LFVWKRLEFG IHLTKWHLPG ISCLLRTSPY 780 LETLAIYISP GRYHIFTVVM EGNDDIVETN SCKRQRVSEE QVIDRISSLP DPLIVHILSF 840 LPTEDAVKTV LIRRFGKLWT FVSRLSFDQC SYHDCADIVY SDDVEYDERF LDFVHNVLIL 900 HENPTIDQFI LKLHYNSLWC PSEEGPNDNV DREMRITDQV NSWVHFAMRK KVELLHLDFK 960 GCGFFEPDAY ILPDVVMNCQ YLTQLKLVAC EIIPTGQIKL NTLKRLFLEE IDLKGEILNQ 1020 ILCGSSVLEE LSLVKCYSLH TLAFKNPSIK SLIVEFEPMT SSQRLQISCP NLVSLQLAGF 1080 IDLMDLVDVS SLAVSSIFFS FHSKCALVRH QEIRRVFQKL SRSKLVRLCT WSIMVFTTWQ 1140 LNGLQDLFCR WKCLEFSVVL SKWHHMGICF LLRSSPYLET LTIYIGRGLG QHLVQVFEEE 1200 WAEYDLDMSK FWSSQVGSFR CLQYHLKTIT IYGLITEPYM IDFIEFLLKK AMVLESLVIS 1260 TDTVLKPPQQ PEIFGVT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-121 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO61486 |