PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61486
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 1277aa    MW: 146106 Da    PI: 7.0908
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61486genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-077292526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               C +++  G+C +GdrC++ H+
  OMO61486 72 VCTYWMS-GHCAFGDRCRYLHS 92
              6*****9.*************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1277 aa     Download sequence    
METKRAARRY ADDSVERICV RRTGLATSAN VYRRNSKPYN AISDNQPRKS SYHGPKTSYV  60
STPKARKQED KVCTYWMSGH CAFGDRCRYL HSWSCGDGFS SLAKLEGHKK AVSGIVLPLG  120
SDKLYSSSSD GTLRIWDCHS GKCARLSNLG DEVGSVYTEG RWMFIGMKNV VKAWNIETAE  180
EFSLKGPVGQ IFCMVVAKDM IIAGAQNGAI FAWKCSSEVN NPFQLVGSRK VHSRAVLCLT  240
VGENKLYSGS VDHTIRVWDI DTLQCIKTLN GHEDAVMSLL HCNGCLFSCS LDCSTKVWFA  300
AEGENWKVIY THKEEKGVLA LCGMNDAENK PVLFCSCNDK TVRLYDLPSF RTANFAFTER  360
GRTFSKEEVR VIYRGPYPLF FTGDASGSLT VWKWVVMEVI KDDSAEKNIC KRQRVSEEEL  420
DDRISSLPDN ILVHILSFLP IKDAVKTVLV PRFRNLWNFL PSLSFNQCGY HDCASKYDED  480
GPHYNEKFLN FVRHVLFLHE SATIDRFHLK FELNLDRTNE AAADEEDEEA RDYANRETMM  540
ASEVDSWIHF VMRKKVKVLN LDFKGCGLPE PTACYRLPNV VFGGKYLTEL KLVACEIKPS  600
HKIQLNCLKR LLLEELVLED KIINQILKGC SLLEELSLIR CYGLRRLATD NPNTKSLILD  660
LYYHGPMLQV LCPNVESLEI GGSIDLVDLV DVSSIAVSAV VFSSTFKCKH ERYQTLKALF  720
KKLSHGKIFI PCTWCILVFT IWQLIYQPGL LFVWKRLEFG IHLTKWHLPG ISCLLRTSPY  780
LETLAIYISP GRYHIFTVVM EGNDDIVETN SCKRQRVSEE QVIDRISSLP DPLIVHILSF  840
LPTEDAVKTV LIRRFGKLWT FVSRLSFDQC SYHDCADIVY SDDVEYDERF LDFVHNVLIL  900
HENPTIDQFI LKLHYNSLWC PSEEGPNDNV DREMRITDQV NSWVHFAMRK KVELLHLDFK  960
GCGFFEPDAY ILPDVVMNCQ YLTQLKLVAC EIIPTGQIKL NTLKRLFLEE IDLKGEILNQ  1020
ILCGSSVLEE LSLVKCYSLH TLAFKNPSIK SLIVEFEPMT SSQRLQISCP NLVSLQLAGF  1080
IDLMDLVDVS SLAVSSIFFS FHSKCALVRH QEIRRVFQKL SRSKLVRLCT WSIMVFTTWQ  1140
LNGLQDLFCR WKCLEFSVVL SKWHHMGICF LLRSSPYLET LTIYIGRGLG QHLVQVFEEE  1200
WAEYDLDMSK FWSSQVGSFR CLQYHLKTIT IYGLITEPYM IDFIEFLLKK AMVLESLVIS  1260
TDTVLKPPQQ PEIFGVT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-121C3H family protein