PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61355
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 366aa    MW: 40186.1 Da    PI: 8.6251
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61355genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32174230158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF
   OMO61355 174 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 230
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MHLKPDDTNH PEVNVNNNAS YTVRSQPWWC SSRQDAILTD ALGEGKLSLS ATNDPNRSSR  60
TKTCEPLSKD GTNDEISASK EMCLTVLPHP DGKCGDEQPH LQHAVPIIPP MVGEYVAPPT  120
QLELVGHSIA CPSYPYADPY YGGVVPPCGP QSLLHSHCLG VHPTRMALPL EMAEEPVYVN  180
AKQYHGILRR RQSRAKAELE KKLIKVRKPY LHESRHLHAM RRARGCGGRF LNTKKLDSDA  240
SNATHDKGGD PISIVSSHPT NSSSGAKSIS SEMSSQNVIK TSIGHRQTTE SEMQGTHMLQ  300
AFSNSNSKMY RTNSNGNSAR YSLHQGFSFS PSHSLSDKMM EEGDCAGQQH KRIVGNGVPH  360
RALTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.27e-42NF-YA family protein