PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60789

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 792aa MW: 89807 Da PI: 6.7449

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60789	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72	1.4e-22	63	147	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YAk++GF v++++s++sk +g++++ ++vC+++g+++e++ ++r+ +++C+a++++k+++dgkw ++++ ++HnH+l+p OMO60789 63 LYKKYAKKMGFGVTTRSSRRSKLSGQFIDVKYVCTRHGTKRETNAV-----NPRPCLKMECQAMFHIKRKHDGKWFLHNFIKDHNHDLFP 147 7************************************9997655.....9*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MDNGIDSNDF IYGMNDNIVD CVENVDQEDE TGLFDSHGEN NENHDKDPQV GMEFDSPENA 60 YSLYKKYAKK MGFGVTTRSS RRSKLSGQFI DVKYVCTRHG TKRETNAVNP RPCLKMECQA 120 MFHIKRKHDG KWFLHNFIKD HNHDLFPAHS HFFPCHRSIN SAKRYDINTL HTVGVQTSKI 180 FAAMAKQHGG YENIGCLEKD IRNHLDKERC LALESGDANA MLEFFMQMQE KDPNFFYAMD 240 LDDEHRLKNV FWVDGKGRED YQDFGDVVSF DTTYITNKYQ MPFAPFIRVN NHHQSTLLGC 300 ALLANESAST FSWLMQTWVR AMGGKPPSAI ITDQDRAMKA AIQLVFPDSR HRHCLWHILK 360 RVPKACGGLK SVRTKYKKGS GCEELQSKKQ RRDALFDRAT ELIEEGSLSL ESYNIAHQAL 420 QDALKRCSSV NHSLNLSNKD ACGANESHDL GKENFDCNIL HEKKILDPKD TQSKAGKSKD 480 IGNNFPKDCS SNSGTQDAYP LVAETVKSAV LEAIKAGYRH FDTAFVYGSE QPLGEAIAEA 540 LNIGLIKSRD ELFITSKLWC TFADQDLVIP AIQMSLKNLQ LEYLDLYLIH WPIKFSKEIT 600 QIPIPKEDIF PIDIKSVWTA MEKCQALGLT KAIGVSNFSS QKIEEVLSFA KIPPAVNQVE 660 LNPLWQQKEL REFCKEKGIH VSAHSPLGSK GTLWGDSRVF DCDVLKEIAE AKGKTIAQIS 720 LKWVYEQGAS VITKSFNKER MKENLEILDW SLTSEELDKI SRIPQRKGGL LSTFIEPNDL 780 VKELEAELTL IS

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MDNGIDSNDF IYGMNDNIVD CVENVDQEDE TGLFDSHGEN NENHDKDPQV GMEFDSPENA  60
YSLYKKYAKK MGFGVTTRSS RRSKLSGQFI DVKYVCTRHG TKRETNAVNP RPCLKMECQA  120
MFHIKRKHDG KWFLHNFIKD HNHDLFPAHS HFFPCHRSIN SAKRYDINTL HTVGVQTSKI  180
FAAMAKQHGG YENIGCLEKD IRNHLDKERC LALESGDANA MLEFFMQMQE KDPNFFYAMD  240
LDDEHRLKNV FWVDGKGRED YQDFGDVVSF DTTYITNKYQ MPFAPFIRVN NHHQSTLLGC  300
ALLANESAST FSWLMQTWVR AMGGKPPSAI ITDQDRAMKA AIQLVFPDSR HRHCLWHILK  360
RVPKACGGLK SVRTKYKKGS GCEELQSKKQ RRDALFDRAT ELIEEGSLSL ESYNIAHQAL  420
QDALKRCSSV NHSLNLSNKD ACGANESHDL GKENFDCNIL HEKKILDPKD TQSKAGKSKD  480
IGNNFPKDCS SNSGTQDAYP LVAETVKSAV LEAIKAGYRH FDTAFVYGSE QPLGEAIAEA  540
LNIGLIKSRD ELFITSKLWC TFADQDLVIP AIQMSLKNLQ LEYLDLYLIH WPIKFSKEIT  600
QIPIPKEDIF PIDIKSVWTA MEKCQALGLT KAIGVSNFSS QKIEEVLSFA KIPPAVNQVE  660
LNPLWQQKEL REFCKEKGIH VSAHSPLGSK GTLWGDSRVF DCDVLKEIAE AKGKTIAQIS  720
LKWVYEQGAS VITKSFNKER MKENLEILDW SLTSEELDKI SRIPQRKGGL LSTFIEPNDL  780
VKELEAELTL IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-105	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO60789