PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO60710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ARR-B | ||||||||
Protein Properties | Length: 673aa MW: 73076.6 Da PI: 6.4501 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3e-28 | 228 | 281 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl OMO60710 228 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 281 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 7.8e-13 | 230 | 280 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qk++ OMO60710 230 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 280 678**********************************************97 PP | |||||||
3 | Response_reg | 75.9 | 1.5e-25 | 45 | 153 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++++ +l++ y +v+++++++ al+ll+e++ +D+il D+ mp+mdG++ll++ e +lp+i+++a g + + + ++ Ga OMO60710 45 VLVVDDDITCLRIVEHMLRRCLY-NVTTCSQAKVALNLLRERKgcFDVILSDVYMPDMDGYKLLEHVGLEM-DLPVIMMSADGRTSAVMKGIRHGAC 139 89*********************.*******************************************6644.8************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + OMO60710 140 DYLIKPIREEELKN 153 ***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence |
MAAMQRLAQS SVSTSAAATS NYGGSSSFRG VETVISDQFP AGLRVLVVDD DITCLRIVEH 60 MLRRCLYNVT TCSQAKVALN LLRERKGCFD VILSDVYMPD MDGYKLLEHV GLEMDLPVIM 120 MSADGRTSAV MKGIRHGACD YLIKPIREEE LKNIWQHVVR KKWNENKELE HSGSLDDNDR 180 HKRGIDDAEY ASSVNDGTDV SFKSQKKRSI TKEEEEENEN DDPSSSKKPR VVWSVELHQQ 240 FVSAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLKRISGVA QQGGIGNPLC 300 GPVEPNVKIG SLGRFDIQAL AASGQIPPQT FAALHAELLG RPTGNLVTAM DQPALLQASL 360 QGPKCIPVEH GVAFGQPLVK CQSNISKHFP QSIVSVEDVP SGFGTWPSSN ISAAGPSSSL 420 GGLSSQNGNM LIDLLHQQQQ QRQLQKPQLQ QQSAVPEPSR LINVQPSCLV VPSQSSASFQ 480 AGNSPASVNQ NGSFNKTAVI DYSLLSPQSN NSSLNIGQVT DGDLQTTGIL SGYIPPASIS 540 PSVSSCSINA DNCSSQQLQN SSMTFKASRQ LPIVHSLPDV QGSYGAVKLG EVLDQAPFAN 600 LGYNDKGTCL PTRFAVDEFQ SPMSSSSRGK IFAENIGTRV KQEPNMEFVD NSRVGIPMLQ 660 QFPPNELMSV FTE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-121 | ARR-B family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO60710 |