PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60646
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 625aa    MW: 68169.6 Da    PI: 5.4346
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60646genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.96.3e-1402556141374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               lv++Ll+cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l p++  +++ s++l+++  f+e++P+lkf+h+taNqa
  OMO60646 255 LVHALLACAEAVQQNNLNLAEALVKQIGFLAISQAGAMRKVATYFAEALARRIYR--------LYPQNPLDHSLSDVLHMH--FYETCPYLKFAHFTANQA 345
               689****************************************************........445555556688888885..****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp..gE 200
               Ilea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L+++p   E
  OMO60646 346 ILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPAFRLTGIGPPSHDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLDLRPseVE 446
               *************************************************************************************************8889 PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               a+aVn+v++lh+ll++++++++    vL++vk+++P++v++veqea+hn++ Fl+rf+e+l+yys+lfdsle ++   s++++++++++lg++i+nvvace
  OMO60646 447 AVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGSV---SSQDKVMSEVYLGKQICNVVACE 540
               **************99999988....************************************************7...9999******************* PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               g +r+erhetl++Wr rl++aGF p++l+++a kqa++ll+ ++ +dgy vee++g+l+lgW++rpL+++SaW+
  OMO60646 541 GPDRVERHETLAQWRTRLGSAGFAPAHLGSNAFKQASMLLALFAgGDGYGVEENNGCLMLGWHNRPLIATSAWK 614
               *************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    
MKRDHYHLQP NNNPEPSTVG SSSACGGSTN GKAKMWEEEA AQQDCGMDEL LAVLGYKVKT  60
SDMAEVAQKL EQLEEVMCNV QDDGISHLAS ETVHYNPSDL STWLESMLSE LNPPNTFDPI  120
VSSGPALPAA LDDSFLGPAE SSNLTTLDFD TSNQNKGRRL FEEASCSDYD LKAIPGKAIY  180
SQKSQTQTQT QTHDSSSSSS LNNVKSEKRL KPSSGSHSDI FPPAAAAASS SSYGISAEST  240
RPVVLVDSQE NGVRLVHALL ACAEAVQQNN LNLAEALVKQ IGFLAISQAG AMRKVATYFA  300
EALARRIYRL YPQNPLDHSL SDVLHMHFYE TCPYLKFAHF TANQAILEAF EGKKRVHVID  360
FSMNQGMQWP ALMQALALRV GGPPAFRLTG IGPPSHDNSD HLQEVGWKLA QLAETIHVEF  420
EYRGFVANSL ADLDASMLDL RPSEVEAVAV NSVFELHKLL ARPGAIDKVL SVVKQMKPEI  480
VTIVEQEANH NGPVFLDRFT ESLHYYSTLF DSLEGSVSSQ DKVMSEVYLG KQICNVVACE  540
GPDRVERHET LAQWRTRLGS AGFAPAHLGS NAFKQASMLL ALFAGGDGYG VEENNGCLML  600
GWHNRPLIAT SAWKLANKTT AVATH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein