PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60621

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WOX

Protein Properties

Length: 454aa MW: 50827.8 Da PI: 9.513

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60621	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	308	367	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ +r+psa++++++A++l +++ ++V++WFqN++a+e++ OMO60621 308 SRWNPTAEQLLALEELYRRgTRTPSAAQIQQIATRLrrfgKIEGKNVFYWFQNHKARERQ 367 7***************99************************************97 PP
2	Wus_type_Homeobox	109.8	1.5e-35	307	369	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQ+ Leely++G+rtP++++iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ OMO60621 307 SSRWNPTAEQLLALEELYRRGTRTPSAAQIQQIATRLRRFGKIEGKNVFYWFQNHKARERQKR 369 68***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MSPQREFKPS KALEGVHGVQ VVHRSSFSSE EIDQHGNFQS THDRSFITAN QPLLIQVWQQ 60 RPACLRPVRG CSHGDQTLLE TVANVLTSIP FIALGIQAPR KNLNTKLYAN SLIGVGVAST 120 LYHSSRGKVR KYLRWADYTM IATATVCLSR ALRSENPKLL MAASALLLPV QPLMVSAVHT 180 GMMEVAFAKR ALKDPELRMA HTVHKMSSLL GGFFFIADDV FPSTPFLHAA WHLAAAVGVG 240 TYLNLSHHNS FNNIAKPNAS SCHACPNPTS TLFALTHAHL ANSFVADVVS NKGEELISNE 300 QQQPLGSSRW NPTAEQLLAL EELYRRGTRT PSAAQIQQIA TRLRRFGKIE GKNVFYWFQN 360 HKARERQKRR REVLDTTDQP QPSETQTLEN KEPPADENRE EQTLELFPLG SSNYDCNNNG 420 INKIIKEDTQ VPIRAINTNF TQNLQFFEFL PLKN

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MSPQREFKPS KALEGVHGVQ VVHRSSFSSE EIDQHGNFQS THDRSFITAN QPLLIQVWQQ  60
RPACLRPVRG CSHGDQTLLE TVANVLTSIP FIALGIQAPR KNLNTKLYAN SLIGVGVAST  120
LYHSSRGKVR KYLRWADYTM IATATVCLSR ALRSENPKLL MAASALLLPV QPLMVSAVHT  180
GMMEVAFAKR ALKDPELRMA HTVHKMSSLL GGFFFIADDV FPSTPFLHAA WHLAAAVGVG  240
TYLNLSHHNS FNNIAKPNAS SCHACPNPTS TLFALTHAHL ANSFVADVVS NKGEELISNE  300
QQQPLGSSRW NPTAEQLLAL EELYRRGTRT PSAAQIQQIA TRLRRFGKIE GKNVFYWFQN  360
HKARERQKRR REVLDTTDQP QPSETQTLEN KEPPADENRE EQTLELFPLG SSNYDCNNNG  420
INKIIKEDTQ VPIRAINTNF TQNLQFFEFL PLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-32	WOX family protein

Link Out ? help Back to Top
Ensembl	OMO60621