PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60554

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 312aa MW: 33741.2 Da PI: 9.1441

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60554	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.7	6.1e-42	24	100	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ OMO60554 24 CLVDGCTADLSRCRDYHRRHKVCEAHSKTPTVTIRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MESSPSASFK RARAPGGANQ VPSCLVDGCT ADLSRCRDYH RRHKVCEAHS KTPTVTIRGQ 60 EQRFCQQCSR FHSLGEFDEG KRSCRKRLDG HNRRRRKPQP DSLSGNSGRF LSNHQGTRFL 120 PFSNPQIFTT STVTSSWPGA VKVESDIGSE INFGGRNTFY PGSSSHNYKG EKQFSFLQST 180 SSSSLPVVSV CQPLLDAIPS SSSNSGSSRK MFSNGLNQAV DTSRALSLLS SQPAETRGIG 240 LSPMVQSGPS ASSLIPNLQY NGNIGLEGEQ VGSILASDGS DNTDLNGHEM YRTVHPGSSA 300 TGTHQTISFS WE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-53	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO60554