PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60505

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 980aa MW: 109110 Da PI: 5.6524

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60505	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.1	2.2e-55	13	128	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e + rwlk+ e++ iL+n+ek++lt+e+++ p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+yw+L OMO60505 13 QEaQVRWLKPAEVHFILQNHEKYQLTQEPPQMPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEHNPSFQRRSYWML 113 55599********************************************************************************************** PP CG-1 103 eeelekivlvhylev 117 + ++e+ivlvhy+e+ OMO60505 114 DPAFEHIVLVHYRET 128 ***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence
MAQSGFDINH LFQEAQVRWL KPAEVHFILQ NHEKYQLTQE PPQMPTSGSL FLFNKRVLRF 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE HNPSFQRRSY WMLDPAFEHI 120 VLVHYRETNE AKPSSGSIVQ SPVSTSALSP NPNSYTSQNP VSNSLASDLH ESYQNLSSPE 180 VSSNIVIKNE GVDNTVEYAS PEVSQALKRL EEQLSLNEDS FKEMNPFCGL DGDTDHPELL 240 EYGREIANHD TQADQLYKPN DIVQDHLYSQ HAMVENYSNR LAVLPDGAKS GEQSQVYSND 300 SSDGSKESLY WKDVFDLYKT QSGVDSQGKS LSYSRGRPAE QQEQPRWLNF NAPNIEDSSK 360 LLHQEVGNVG IPSYASEIEA IDNNSDYYMM MLNHDGMGIP LAEDSSLTVA QKQKFTIREI 420 SPEWGYSNEA TKVIIVGSFL CDPSESAWAC MFGETEVPLE IIQEGVVCCK APPHLPGKVT 480 LCMTSGNRES CSEIREFEYR INTSSSAQCD LSRTEASKSP EELLLLVRFA QMLLSDSSLQ 540 KDSAESEIYL LRKFKADDDS WSHVIEALLV GSGTSSGTVD WLLQELLKDK LQQWLCSRSK 600 GAGDQSGCIM SKKEQGIIHM AAGLGFEWAL SPILRHGVSI NFRDINGWTA LHWAARFGRE 660 KMVAALIASG ASAGAVTDPT SQDPNGKTAA SIAASSGHKG LAGYLSEVAL TSHLSSLTLE 720 ESELSKGSAA VQAEMAVNSV SKGSLATCDD QLSLKDTLAA VRNAAQAAAR IQNAFRAHSF 780 RKRQQREGAA LASLDEYGIS PDEIQGLSTM SKLAFGNARD YNSAALSIQK KFRGWKGRKD 840 FLALRQKVVK IQAYVRGYQV RKNYKVICWA VGVLDKVVLR WRRKGVGLRG FRSEPEPIDE 900 SEDEDILKVF RKQKVDVAVD EAVSRVLSMV DSPDARQQYR RMLEKYREAK ADLVNTNEPA 960 ASTSIGDTYD MESDDFFQFP

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence

MAQSGFDINH LFQEAQVRWL KPAEVHFILQ NHEKYQLTQE PPQMPTSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNVE TLNCYYAHGE HNPSFQRRSY WMLDPAFEHI  120
VLVHYRETNE AKPSSGSIVQ SPVSTSALSP NPNSYTSQNP VSNSLASDLH ESYQNLSSPE  180
VSSNIVIKNE GVDNTVEYAS PEVSQALKRL EEQLSLNEDS FKEMNPFCGL DGDTDHPELL  240
EYGREIANHD TQADQLYKPN DIVQDHLYSQ HAMVENYSNR LAVLPDGAKS GEQSQVYSND  300
SSDGSKESLY WKDVFDLYKT QSGVDSQGKS LSYSRGRPAE QQEQPRWLNF NAPNIEDSSK  360
LLHQEVGNVG IPSYASEIEA IDNNSDYYMM MLNHDGMGIP LAEDSSLTVA QKQKFTIREI  420
SPEWGYSNEA TKVIIVGSFL CDPSESAWAC MFGETEVPLE IIQEGVVCCK APPHLPGKVT  480
LCMTSGNRES CSEIREFEYR INTSSSAQCD LSRTEASKSP EELLLLVRFA QMLLSDSSLQ  540
KDSAESEIYL LRKFKADDDS WSHVIEALLV GSGTSSGTVD WLLQELLKDK LQQWLCSRSK  600
GAGDQSGCIM SKKEQGIIHM AAGLGFEWAL SPILRHGVSI NFRDINGWTA LHWAARFGRE  660
KMVAALIASG ASAGAVTDPT SQDPNGKTAA SIAASSGHKG LAGYLSEVAL TSHLSSLTLE  720
ESELSKGSAA VQAEMAVNSV SKGSLATCDD QLSLKDTLAA VRNAAQAAAR IQNAFRAHSF  780
RKRQQREGAA LASLDEYGIS PDEIQGLSTM SKLAFGNARD YNSAALSIQK KFRGWKGRKD  840
FLALRQKVVK IQAYVRGYQV RKNYKVICWA VGVLDKVVLR WRRKGVGLRG FRSEPEPIDE  900
SEDEDILKVF RKQKVDVAVD EAVSRVLSMV DSPDARQQYR RMLEKYREAK ADLVNTNEPA  960
ASTSIGDTYD MESDDFFQFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO60505