PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60393

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 382aa MW: 43760.1 Da PI: 6.5213

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60393	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.3	3.7e-27	72	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e OMO60393 72 WVQDETRSLIGLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 153 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MYLSEKPRPI DLYKEEGPAT ARDMIIEVTS NGDLPPHHHA PPHQQQQQQM ILGDSSGEDP 60 EVKAPKKRAE TWVQDETRSL IGLRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KSAYKSPTPP PKVDSFMHFS 180 DKGFEDTGIS FGPVEASGRP TLNLERRLDH DGHPLAITAP DAVTASGVPP WNWRETPGNG 240 GDCQSYGGRV ITVKFGDYTR RIGIDGTADA IREAIKSAFR LRTKRAFWLE DEDHIVRSLD 300 RDMPLGIYTL QLDEGLPIKV CLYDDSDHIP VHTEEKIFYT EDDYREYLVR RGYTSLREID 360 GYSRNVDNMD DLRPNAIYRG VN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MYLSEKPRPI DLYKEEGPAT ARDMIIEVTS NGDLPPHHHA PPHQQQQQQM ILGDSSGEDP  60
EVKAPKKRAE TWVQDETRSL IGLRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC  120
TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KSAYKSPTPP PKVDSFMHFS  180
DKGFEDTGIS FGPVEASGRP TLNLERRLDH DGHPLAITAP DAVTASGVPP WNWRETPGNG  240
GDCQSYGGRV ITVKFGDYTR RIGIDGTADA IREAIKSAFR LRTKRAFWLE DEDHIVRSLD  300
RDMPLGIYTL QLDEGLPIKV CLYDDSDHIP VHTEEKIFYT EDDYREYLVR RGYTSLREID  360
GYSRNVDNMD DLRPNAIYRG VN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO60393