PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60368

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARR-B

Protein Properties

Length: 581aa MW: 65360.6 Da PI: 5.482

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60368	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	78.5	8.3e-25	200	253	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl OMO60368 200 KARVVWTVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*****************.9*****************************8 PP
2	Myb_DNA-binding	39.9	9.6e-13	202	252	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT ++++++v+av+q G + +k+I m+ +t++++ s++qky+ OMO60368 202 RVVWTVDLHQKFVKAVNQIGFDkvGPKKILDLMNvPWLTRENVASHLQKYR 252 678***********************************************7 PP
3	Response_reg	82.7	1.1e-27	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ Ga OMO60368 20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALTLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 114 89*******************.***********999999******************6644.8******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ ++el++ OMO60368 115 DYLLKPIRMKELRN 128 *********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MVESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA REALTLLRER 60 KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE VRDIESLEGI EHYHMTRSGS DMVDDGHLLG GEDTTSVRKR 180 KDAESKHDDK DLNDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK ESDTKNSFVG MKNMDPPSKD STTSFGLHNS VNMIKDDASN 300 GSYSFSVKNS IVQNVDIKGY EGDRKGITSV AGPNSKGALS IDIPNPRKAK SSQISFDHSL 360 ASVDSGVNFP SFNSSNPDRY SWSEIPEIQF KQECEPLPLE NGFGQLPLPV PQHHIQADYI 420 KPAPSISSAP SITEKEATSS SIEVKPLYEE YRSNHVKQLS PTEAVDFLPD QSKSQTLNNQ 480 VFEPISATTS SMRSQGISLN CLTDLEFAQR NLNEDLQICW LQAQGDCYAT NIGLQDLQAI 540 EYNDPAPIYE IPFHLYDAPR FDHEHLFDTT EYSAIDQGLF A

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MVESGFSSPR HDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA REALTLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIESLEGI EHYHMTRSGS DMVDDGHLLG GEDTTSVRKR  180
KDAESKHDDK DLNDPSSTKK ARVVWTVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK ESDTKNSFVG MKNMDPPSKD STTSFGLHNS VNMIKDDASN  300
GSYSFSVKNS IVQNVDIKGY EGDRKGITSV AGPNSKGALS IDIPNPRKAK SSQISFDHSL  360
ASVDSGVNFP SFNSSNPDRY SWSEIPEIQF KQECEPLPLE NGFGQLPLPV PQHHIQADYI  420
KPAPSISSAP SITEKEATSS SIEVKPLYEE YRSNHVKQLS PTEAVDFLPD QSKSQTLNNQ  480
VFEPISATTS SMRSQGISLN CLTDLEFAQR NLNEDLQICW LQAQGDCYAT NIGLQDLQAI  540
EYNDPAPIYE IPFHLYDAPR FDHEHLFDTT EYSAIDQGLF A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-136	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OMO60368