PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO60364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 412aa MW: 46244.2 Da PI: 6.2547 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 133.2 | 2.9e-41 | 127 | 296 | 1 | 168 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAeav+ +d+ a+alL++l+ +a g+++qR+a++f+++La rla ++ + + + ++++ s e+ al+l +e++P ++f+h++aN OMO60364 127 LVQQLISCAEAVACRDKIHASALLSELRANALVFGTSFQRVASCFVQGLADRLALVQPlGAVGVIGLTAKAMAVSLEKDEALSLVYELCPQIQFGHFVANA 227 689***************************************************933314444445555555558899999999***************** PP GRAS 101 aIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakf 168 Ilea+ege+ vH++D+++ s G QW++L++ L R+++pp +lRiTgvg e+l+++g+ L++f OMO60364 228 SILEAFEGESFVHVVDLGMtlglSRGHQWLNLMKGLVHRSGQPPkRLRITGVGT----CPERLQAIGDDLEQF 296 ****************97622226788*************777779********....*************99 PP | |||||||
2 | GRAS | 138.5 | 6.8e-43 | 293 | 412 | 254 | 374 |
GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 le+f+eal+yysa+fdsl++ lp+ + r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++ +++qak l k+k +gy++ e OMO60364 293 LEQFMEALHYYSAIFDSLDTMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARIERHERVDQWRRRMSRAGFQPAPIK--MVMQAKKWLGKFKvCEGYTIVE 391 589************************************************************************96..799******************* PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 ++g+lvlgWk++p++++S+W+ OMO60364 392 DKGCLVLGWKSKPIIAASCWK 412 ********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence |
MEPGLQWQPE LFDDGQSNEV MGLDLNLPGF QISPLSCPIY RDWPIFVETR NHKRLKLEDS 60 TDESIGRNSS KTSLPKLQFR DHIWAYTQRY LAIEAMEEAT VNALAGTEQE NEIKAEEGTG 120 VGEEMKLVQQ LISCAEAVAC RDKIHASALL SELRANALVF GTSFQRVASC FVQGLADRLA 180 LVQPLGAVGV IGLTAKAMAV SLEKDEALSL VYELCPQIQF GHFVANASIL EAFEGESFVH 240 VVDLGMTLGL SRGHQWLNLM KGLVHRSGQP PKRLRITGVG TCPERLQAIG DDLEQFMEAL 300 HYYSAIFDSL DTMLPKYDTR RAKMEQFYFA EEIKNIVSCE GPARIERHER VDQWRRRMSR 360 AGFQPAPIKM VMQAKKWLGK FKVCEGYTIV EDKGCLVLGW KSKPIIAASC WK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-29 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO60364 |