PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60364
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 412aa    MW: 46244.2 Da    PI: 6.2547
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60364genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.22.9e-411272961168
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalklfsevsPilkfshltaNq 100
               lv++L++cAeav+ +d+  a+alL++l+ +a   g+++qR+a++f+++La rla  ++ + +  +  ++++   s e+  al+l +e++P ++f+h++aN 
  OMO60364 127 LVQQLISCAEAVACRDKIHASALLSELRANALVFGTSFQRVASCFVQGLADRLALVQPlGAVGVIGLTAKAMAVSLEKDEALSLVYELCPQIQFGHFVANA 227
               689***************************************************933314444445555555558899999999***************** PP

      GRAS 101 aIleavegeervHiiDfdi....sqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakf 168
                Ilea+ege+ vH++D+++    s G QW++L++ L  R+++pp +lRiTgvg       e+l+++g+ L++f
  OMO60364 228 SILEAFEGESFVHVVDLGMtlglSRGHQWLNLMKGLVHRSGQPPkRLRITGVGT----CPERLQAIGDDLEQF 296
               ****************97622226788*************777779********....*************99 PP

2GRAS138.56.8e-43293412254374
      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353
               le+f+eal+yysa+fdsl++ lp+ +  r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+p++  +++qak  l k+k  +gy++ e
  OMO60364 293 LEQFMEALHYYSAIFDSLDTMLPKYDTRRAKMEQFYFAEEIKNIVSCEGPARIERHERVDQWRRRMSRAGFQPAPIK--MVMQAKKWLGKFKvCEGYTIVE 391
               589************************************************************************96..799******************* PP

      GRAS 354 esgslvlgWkdrpLvsvSaWr 374
               ++g+lvlgWk++p++++S+W+
  OMO60364 392 DKGCLVLGWKSKPIIAASCWK 412
               ********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MEPGLQWQPE LFDDGQSNEV MGLDLNLPGF QISPLSCPIY RDWPIFVETR NHKRLKLEDS  60
TDESIGRNSS KTSLPKLQFR DHIWAYTQRY LAIEAMEEAT VNALAGTEQE NEIKAEEGTG  120
VGEEMKLVQQ LISCAEAVAC RDKIHASALL SELRANALVF GTSFQRVASC FVQGLADRLA  180
LVQPLGAVGV IGLTAKAMAV SLEKDEALSL VYELCPQIQF GHFVANASIL EAFEGESFVH  240
VVDLGMTLGL SRGHQWLNLM KGLVHRSGQP PKRLRITGVG TCPERLQAIG DDLEQFMEAL  300
HYYSAIFDSL DTMLPKYDTR RAKMEQFYFA EEIKNIVSCE GPARIERHER VDQWRRRMSR  360
AGFQPAPIKM VMQAKKWLGK FKVCEGYTIV EDKGCLVLGW KSKPIIAASC WK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-29GRAS family protein