PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60230
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 460aa    MW: 51067.9 Da    PI: 4.9131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60230genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.82.3e-49462262181
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lLl+cA a++s+d +laq++++ l++ as  gdp+qRl++ f++AL +r +r +++ ++    s+ +++ ++ +   l  ++++ P+++f++ + N+aI
  OMO60230  46 EKLLLHCASALESNDVTLAQQVMWVLNNVASTVGDPNQRLTSWFLRALVSRASRFCPTAMNFNGGSTFQRRLMTVT--ELAGYVDLIPWHRFGFCASNSAI 144
               689***************************************************9999998887777764333333..33359****************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl 181
                +a++g  +vHi+Df+i++++QWp+L++aLa+Rpegpps+RiT+ +   ++    + ++ee+g+rL++fA+  +vpfef+v+
  OMO60230 145 FKAIQGYPKVHILDFSITHCMQWPTLIDALAKRPEGPPSVRITVPSCRPPVpplLNVSTEEVGHRLSNFAKFRDVPFEFHVI 226
               *******************************************97776566779999***********************96 PP
2GRAS133.91.7e-41242447171374
      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll......desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
               e   +f+f+ l    l+ l++ +L+++++Eal++n++  l +l       ++++s+++   r+++L+++k l P+++vvv++++d++++s+  r++ +++y
  OMO60230 242 ESSANFQFESL----LSHLNPTSLDLREDEALVINCQNWLRYLSddikgnSNTASTPEscLREDFLDIIKALDPRIIVVVDEDSDLSAPSLSSRITTCFNY 338
               556789***98....999***********************9995555552333333356899************************************** PP

      GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                +  fd+le+ lp++s++r  +E   +g +i+n+++ eg +r+er e+ +k +er+ +aGF +vp+ e++++++k+ll +++  g+ ++ e++ lvl+Wk+
  OMO60230 339 LWIPFDALETFLPKDSSQRLEYESD-IGHKIENIISFEGYQRIERVESGAKLSERMINAGFLSVPFWEETVTEVKSLLDEHA-SGWGMKREEDMLVLTWKG 437
               *************************.********************************************************.889999999********* PP

      GRAS 365 rpLvsvSaWr 374
               ++ v+++aW+
  OMO60230 438 HSSVFATAWT 447
               *********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MKTEVRGNGA SISLQNPSLF INSTPQSSIT GALRGCLGSL DGACIEKLLL HCASALESND  60
VTLAQQVMWV LNNVASTVGD PNQRLTSWFL RALVSRASRF CPTAMNFNGG STFQRRLMTV  120
TELAGYVDLI PWHRFGFCAS NSAIFKAIQG YPKVHILDFS ITHCMQWPTL IDALAKRPEG  180
PPSVRITVPS CRPPVPPLLN VSTEEVGHRL SNFAKFRDVP FEFHVIDDPS LSPPPGGVLS  240
KESSANFQFE SLLSHLNPTS LDLREDEALV INCQNWLRYL SDDIKGNSNT ASTPESCLRE  300
DFLDIIKALD PRIIVVVDED SDLSAPSLSS RITTCFNYLW IPFDALETFL PKDSSQRLEY  360
ESDIGHKIEN IISFEGYQRI ERVESGAKLS ERMINAGFLS VPFWEETVTE VKSLLDEHAS  420
GWGMKREEDM LVLTWKGHSS VFATAWTSST ILEDSNLGCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein