PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60204

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

M-type_MADS

Protein Properties

Length: 1136aa MW: 125645 Da PI: 6.9023

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60204	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.2	4.5e-13	14	58	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rq+t+skRr+ i KA ELS da+v +++fss+g+l +y OMO60204 14 SHCSRQITYSKRRECIVRKATELSRTFDADVGLLLFSSSGRLTTY 58 6778****************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence
MGRRRSMVKR KGKSHCSRQI TYSKRRECIV RKATELSRTF DADVGLLLFS SSGRLTTYGQ 60 KGRVEDIFLR YIEHPDQFRG CVFVIALFFF FFFFPVYPMN DTSAVNAMMC SRLEILERQL 120 CEVNRQKYEV QDKIRSYNPD MTKILSVSDA HRHQQVLIDA IERIETLKKS KLLEKEISPS 180 EPSNAEIPVV EVESDLTTEE SVNSKKKRIQ SADNPEGETQ LPGGPHLSIS YLETQKHWNL 240 LNAEDMTSTE EHVLEVAYYA ILFMILLCAL AMRFSEGKRK MPDRVFVKEG RTTTFPEKNE 300 MAEKAWIHCK KEMAEATNDL ISLLSNKQGI DNTIDILLPR ARELLLNCLR KKGVISQSSD 360 LEATFKHLLH ITLGPSPAIA LDTSPAPVSA PKSALAPSPA SFSYGPAPTP FYVPAPSPED 420 HASYVRPHPP GHVVNSLSVS NMISSSSPPP VEHSSPGDHN RRKQSEEQED VMKETIIAVI 480 ATSATTFALV ALFFFCCLKG SRQKKDEKPL LSLSDYMSPD YSPDRSQNIN LASSSNESFT 540 GSRKNPSSAS CLSMTQDNAL AGKSPLSEAT EGASCPPLKP PPGRATAPPP PAAPPAAPPA 600 APPPPPPRAT PPPPPKVGRP PPLPPKSKPA PPAFHRRGNS ASGSGGASAC GDETDGDSDA 660 PKAKLKPFFW DKVNANADQS MVWHEISAGS FQFNEEMIES LFGYQPGTNN KNNQKRDSSS 720 EPAIQYIQII DARKAQNLSI LLRALNVTTQ EVVDALREGN ELPTELLQTL KKMAPTQEEE 780 LKLRLFTGDL SQLGPAERFL KIIVEIPFAF KRIESLLFMN THNEEVTNVK ESFANLEVAC 840 TKLKSSRLFL KLLEAVLKTG NRMNDGTYRG GAQAFKLDTL LKLSDVKGTD GKTTLLHFVV 900 QEMIRSEGRR AVRTQLSNPS LSSFKSEDFV VEDQNQDTEE YYRTLGLQVV SGVSTELAEV 960 KKAAVIDLDS LSATVTKLNH SLTKAGEFLS SELKSTDEDG EFFGSLSSFV DRAAADVRCL 1020 SVEEKRILEQ VQSTADYFHG RATKMEGLRL FAIVRDFLII LDKVCKEVGD TRAKLPQKNS 1080 RKEDSPASTR SLENQQPSSS ENRNPSADIH KRLFPAISDR QMNSSSSDDD SSSDDD

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence

MGRRRSMVKR KGKSHCSRQI TYSKRRECIV RKATELSRTF DADVGLLLFS SSGRLTTYGQ  60
KGRVEDIFLR YIEHPDQFRG CVFVIALFFF FFFFPVYPMN DTSAVNAMMC SRLEILERQL  120
CEVNRQKYEV QDKIRSYNPD MTKILSVSDA HRHQQVLIDA IERIETLKKS KLLEKEISPS  180
EPSNAEIPVV EVESDLTTEE SVNSKKKRIQ SADNPEGETQ LPGGPHLSIS YLETQKHWNL  240
LNAEDMTSTE EHVLEVAYYA ILFMILLCAL AMRFSEGKRK MPDRVFVKEG RTTTFPEKNE  300
MAEKAWIHCK KEMAEATNDL ISLLSNKQGI DNTIDILLPR ARELLLNCLR KKGVISQSSD  360
LEATFKHLLH ITLGPSPAIA LDTSPAPVSA PKSALAPSPA SFSYGPAPTP FYVPAPSPED  420
HASYVRPHPP GHVVNSLSVS NMISSSSPPP VEHSSPGDHN RRKQSEEQED VMKETIIAVI  480
ATSATTFALV ALFFFCCLKG SRQKKDEKPL LSLSDYMSPD YSPDRSQNIN LASSSNESFT  540
GSRKNPSSAS CLSMTQDNAL AGKSPLSEAT EGASCPPLKP PPGRATAPPP PAAPPAAPPA  600
APPPPPPRAT PPPPPKVGRP PPLPPKSKPA PPAFHRRGNS ASGSGGASAC GDETDGDSDA  660
PKAKLKPFFW DKVNANADQS MVWHEISAGS FQFNEEMIES LFGYQPGTNN KNNQKRDSSS  720
EPAIQYIQII DARKAQNLSI LLRALNVTTQ EVVDALREGN ELPTELLQTL KKMAPTQEEE  780
LKLRLFTGDL SQLGPAERFL KIIVEIPFAF KRIESLLFMN THNEEVTNVK ESFANLEVAC  840
TKLKSSRLFL KLLEAVLKTG NRMNDGTYRG GAQAFKLDTL LKLSDVKGTD GKTTLLHFVV  900
QEMIRSEGRR AVRTQLSNPS LSSFKSEDFV VEDQNQDTEE YYRTLGLQVV SGVSTELAEV  960
KKAAVIDLDS LSATVTKLNH SLTKAGEFLS SELKSTDEDG EFFGSLSSFV DRAAADVRCL  1020
SVEEKRILEQ VQSTADYFHG RATKMEGLRL FAIVRDFLII LDKVCKEVGD TRAKLPQKNS  1080
RKEDSPASTR SLENQQPSSS ENRNPSADIH KRLFPAISDR QMNSSSSDDD SSSDDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	6e-18	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO60204