PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60203

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GeBP

Protein Properties

Length: 427aa MW: 47717.3 Da PI: 4.5434

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60203	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	129.2	1.7e-40	196	288	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 r+wse Dei++L+G+i+fk+k+g++p +d+++f++f+k+ i+++vsk+ql++K+rrLK+K+k++ +k ++g++p+fsk+hd+k+felskkiWg OMO60203 196 RVWSEADEIAILKGMIEFKSKKGSDPNSDLSGFHDFIKQFIQAEVSKNQLIDKMRRLKQKYKNNAEKGQNGNDPVFSKPHDHKCFELSKKIWG 288 9*******************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MSRKRPIEQP PPSASSSEEE DSDVEDDEEE ESSDGEKENN SPAERGAETK NDAEEDGDDD 60 DDDDDDDDDE DEDEDEEEEE EEEEEEKTPL KKQKTISGKD GPDSETESES DKSLPSPNVS 120 DFTIKPIVSK PQKSALKSTP NPKPVATESS SKRKNAPSSA VATESSSKRK NPPSSASNGA 180 ASNVKTPGVK TPGGARVWSE ADEIAILKGM IEFKSKKGSD PNSDLSGFHD FIKQFIQAEV 240 SKNQLIDKMR RLKQKYKNNA EKGQNGNDPV FSKPHDHKCF ELSKKIWGNE SNEKIDKSQK 300 KRKTEDHGKS EVKSGITLDL KNDKEVNASN LTLVRCNGEK EKVAFWKDYP HLKESFETEM 360 GKWGNVGPFQ MTLTEDMAGV IGKEKLKEME GKFRKLRIEE LKLYLKRMDL VREQAQEVLD 420 VLKGSNV

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MSRKRPIEQP PPSASSSEEE DSDVEDDEEE ESSDGEKENN SPAERGAETK NDAEEDGDDD  60
DDDDDDDDDE DEDEDEEEEE EEEEEEKTPL KKQKTISGKD GPDSETESES DKSLPSPNVS  120
DFTIKPIVSK PQKSALKSTP NPKPVATESS SKRKNAPSSA VATESSSKRK NPPSSASNGA  180
ASNVKTPGVK TPGGARVWSE ADEIAILKGM IEFKSKKGSD PNSDLSGFHD FIKQFIQAEV  240
SKNQLIDKMR RLKQKYKNNA EKGQNGNDPV FSKPHDHKCF ELSKKIWGNE SNEKIDKSQK  300
KRKTEDHGKS EVKSGITLDL KNDKEVNASN LTLVRCNGEK EKVAFWKDYP HLKESFETEM  360
GKWGNVGPFQ MTLTEDMAGV IGKEKLKEME GKFRKLRIEE LKLYLKRMDL VREQAQEVLD  420
VLKGSNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	302	DKSQKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-28	GeBP family protein

Link Out ? help Back to Top
Ensembl	OMO60203