PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO60069
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 319aa    MW: 35173 Da    PI: 9.4772
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO60069genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-111036127
              --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
              ++++ C+++ rtG C++G++C+F+H+p
  OMO60069 10 PGEPDCSYYIRTGLCRFGATCRFNHPP 36
              5789*********************97 PP

2zf-CCCH32.41.6e-106686727
              SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
              +++++tGtCk+G++CkF+H++
  OMO60069 66 QYYLKTGTCKFGATCKFHHPR 86
              59*****************96 PP

3zf-CCCH38.12.5e-12108132327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               +++C +++rtG+Ck+G++CkF+H++
  OMO60069 108 EAECAYYLRTGQCKFGSTCKFHHPQ 132
               689********************97 PP

4zf-CCCH38.42e-12267293127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C+f+++tG Ck+G+ C+F+H++
  OMO60069 267 PGQPECQFYMKTGDCKFGAVCRFHHPR 293
               5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MESGPYPERP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AIAAARMKGE FPERVGQPEC  60
QAFALQYYLK TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNEAE CAYYLRTGQC  120
KFGSTCKFHH PQPTNMMVSL RGSPIYQTVP SPTTPGQQSY PGGITNWSRG TFIPSPRWQG  180
PSSYAPLILP QGMVSVPGWN AYSGQLASVS SSENLQQANG NNQIYGTSRQ NEPATAGSQA  240
SFSQLRSGSV PVGFYALQRE NVFPERPGQP ECQFYMKTGD CKFGAVCRFH HPRERVLPAP  300
DCMLSPIGLP LRPRVIRAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147C3H family protein