PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO60069

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 319aa MW: 35173 Da PI: 9.4772

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO60069	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	1e-11	10	36	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p OMO60069 10 PGEPDCSYYIRTGLCRFGATCRFNHPP 36 5789*********************97 PP
2	zf-CCCH	32.4	1.6e-10	66	86	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ OMO60069 66 QYYLKTGTCKFGATCKFHHPR 86 59*****************96 PP
3	zf-CCCH	38.1	2.5e-12	108	132	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OMO60069 108 EAECAYYLRTGQCKFGSTCKFHHPQ 132 689********************97 PP
4	zf-CCCH	38.4	2e-12	267	293	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OMO60069 267 PGQPECQFYMKTGDCKFGAVCRFHHPR 293 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MESGPYPERP GEPDCSYYIR TGLCRFGATC RFNHPPNRKL AIAAARMKGE FPERVGQPEC 60 QAFALQYYLK TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNEAE CAYYLRTGQC 120 KFGSTCKFHH PQPTNMMVSL RGSPIYQTVP SPTTPGQQSY PGGITNWSRG TFIPSPRWQG 180 PSSYAPLILP QGMVSVPGWN AYSGQLASVS SSENLQQANG NNQIYGTSRQ NEPATAGSQA 240 SFSQLRSGSV PVGFYALQRE NVFPERPGQP ECQFYMKTGD CKFGAVCRFH HPRERVLPAP 300 DCMLSPIGLP LRPRVIRAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	C3H family protein

Link Out ? help Back to Top
Ensembl	OMO60069