PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59832
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 470aa    MW: 52715.7 Da    PI: 5.7046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59832genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS473.79.8e-145454671374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s   +see+ ++klf+e++P+lk++++++Nqa
  OMO59832  45 LIHLLLTCANHVATGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIS--LVSEEILVRKLFFEMFPFLKVAFVLTNQA 143
               689*************************************************************999987..7**************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               I ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn+ ++++le+l++e+Lrvk+gEal
  OMO59832 144 IIEAMEGEKMVHIIDLNAAEPAQWIALIQALSARPEGPPHLRITGINQ----QKEVLDQLAHRLTEEAEKLDIPFQFNP-IVSKLENLDIEKLRVKTGEAL 239
               ************************************************....9**************************.7999***************** PP

      GRAS 203 aVnlvlqlhrll..........................................................desvsleserdevLklvkslsPkvvvvveqe 245
               a+++vlqlh+ll                                                          ++s+s   + d++L+++++lsPk++vv+eq+
  OMO59832 240 AISSVLQLHTLLaaddellrkksplasknlngiqlqralqmnqstlgellekdmvngyspspdstsssplSSSASA--KVDSFLNALWGLSPKLMVVTEQD 338
               ****************************************************************986643333222..579******************** PP

      GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
               ++hn+++++er+le+l+ y+alfd+le++++r+s er kvE++l+g+ei+n++acegaer+erhe+l kW +rl+ a F++vpls++ + qa++ll+ ++ 
  OMO59832 339 SNHNGSTLMERLLESLYSYAALFDCLESTVSRASLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLDLASFGNVPLSYYGMLQARRLLQGYNC 439
               ***************************************************************************************************** PP

      GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
               dgy+++ee+g++v++W+drpL+svSaWr
  OMO59832 440 DGYKMKEENGCIVICWQDRPLFSVSAWR 467
               ***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MFQEESSSVT SSPLQVFSMM SLSPNLGSPY PWLRELKSEE RGLYLIHLLL TCANHVATGS  60
LENANIALEQ ISQLASPDGD TMQRMAAYFT EALADRILKA WPGLHKALNS TRISLVSEEI  120
LVRKLFFEMF PFLKVAFVLT NQAIIEAMEG EKMVHIIDLN AAEPAQWIAL IQALSARPEG  180
PPHLRITGIN QQKEVLDQLA HRLTEEAEKL DIPFQFNPIV SKLENLDIEK LRVKTGEALA  240
ISSVLQLHTL LAADDELLRK KSPLASKNLN GIQLQRALQM NQSTLGELLE KDMVNGYSPS  300
PDSTSSSPLS SSASAKVDSF LNALWGLSPK LMVVTEQDSN HNGSTLMERL LESLYSYAAL  360
FDCLESTVSR ASLERLKVEK MLFGEEIKNI IACEGAERKE RHEKLDKWIQ RLDLASFGNV  420
PLSYYGMLQA RRLLQGYNCD GYKMKEENGC IVICWQDRPL FSVSAWRCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein