PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59563

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

RAV

Protein Properties

Length: 292aa MW: 33428 Da PI: 10.1015

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59563	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27	1.1e-08	35	82	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV k+++W A+I ++ ++lg++ +e+Aa a+++a++kl OMO59563 35 SRYTGVI-PLKNHKWGARISLN-----YRPYWLGTYQLEEDAALAYDRAALKLQ 82 5677774.44589***9993.....4*********************985 PP
2	B3	61.5	1.4e-19	145	237	1	83
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f +lt+ dv+ + + +pk++a ++ gk +s++lt+ d+ rsW+++++y + +++++t+GW++Fv n+Lk gD+v+F+ OMO59563 145 FHRKLTQTDVTGNEGFNIPKEHALRYfpllgnnsdgvqAGK--GSIDLTFCDKVHRSWTFQYSYGSSTRTFLFTRGWRQFVAMNELKPGDIVIFY 237 77899***********************99997654333..899**************999999**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MVTKSSSLSK AISTPKNSPY GIRSRCTGGK VSYSSRYTGV IPLKNHKWGA RISLNYRPYW 60 LGTYQLEEDA ALAYDRAALK LQRSESPINF PPHVYRNEEK SFQSWYSNEE ILRMIKDKTY 120 SFKFTNFLRR QTLVNARGIP YQVLFHRKLT QTDVTGNEGF NIPKEHALRY FPLLGNNSDG 180 VQAGKGSIDL TFCDKVHRSW TFQYSYGSST RTFLFTRGWR QFVAMNELKP GDIVIFYGCA 240 YVEAGQRRNS YMIDIYRHGA ENYIADKIGA PVEASKGAEK KHEVKLFGVV IG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	4e-45	RAV family protein

Link Out ? help Back to Top
Ensembl	OMO59563