PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59453
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 302aa    MW: 33507.6 Da    PI: 7.7844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59453genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14223248126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +ktelC+ +++tG C+yG+ C+FaHg
  OMO59453 223 FKTELCNKWQETGACPYGNHCQFAHG 248
               79***********************8 PP
2zf-CCCH18.63.3e-06261285125
               --S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
               ykte Cr  +++  C+yG rC+F H
  OMO59453 261 YKTEVCRMVLAGDNCPYGHRCHFRH 285
               9**********55**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MQNDKSSTVY GGDLAANHQI DGTYSSSDSS SSAAAGSLFA LYHPRLLMQQ HQDMINRHNL  60
CLTRLREAAK EAEALRLENA ALRSANRDLN KELSALIQAS VQNHFVSSDY NSTPFELVNA  120
MRDLCLGSVS SVGEEEVCDE SPTSVMEGAK DADRVMLPKS ISVRSNGYLK MMNQAGASHR  180
GKNRGPTRSG SATQLSGAQK VYVQGGKKEE EPLALEVYNQ GMFKTELCNK WQETGACPYG  240
NHCQFAHGIE ELRPVIRHPR YKTEVCRMVL AGDNCPYGHR CHFRHALTED EKFMGHLKPR  300
TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.18e-82C3H family protein