PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO59265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 18653.7 Da PI: 7.8027 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.2 | 1.8e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++p+++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l+ el+++++ OMO59265 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVPPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVMRLQRELDATNA 108 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVPP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVMRLQ RELDATNADL IRYACNEMPP 120 AASGQYGRRS GHGSGGGGGG AGSYNQNSSG FYYPSHQWNS NNGDNESSGG GSM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-71 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO59265 |