PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO59078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25279.4 Da PI: 4.2895 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6.2e-39 | 7 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrr+C+++Cv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i +lqqq+++l++e++ll + OMO59078 7 SCGACKFLRRRCTSECVFAPYFCYDEaTTHFAAVHKVFGASNVSKLLLHLPIHNRSDAAVTISYEALARIRDPIYGCVAHIYALQQQVANLQEEIELLIN 106 6***********************9968******************************************************************998765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MTGLGSSCGA CKFLRRRCTS ECVFAPYFCY DEATTHFAAV HKVFGASNVS KLLLHLPIHN 60 RSDAAVTISY EALARIRDPI YGCVAHIYAL QQQVANLQEE IELLINQMSN HAVEIPSNGN 120 FVENSYFDGE ILQFASLHET MSTVFYQEEQ ATLPNHPGFV TGNQVLETQL CEEIPPSFIL 180 EDQNFLCSDL YQNPPEINYY EGVESGILID YPCMGNSGTM AIQSWE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-57 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO59078 |