PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO59068

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 239aa MW: 26359.8 Da PI: 10.1841

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO59068	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H OMO59068 42 YSCSFCRREFRSAQALGGHMNVH 64 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MRMKRRQFLK SQFQVSMNSL SHESWEEKAF AEDAAIWPPR SYSCSFCRRE FRSAQALGGH 60 MNVHRRDRAR LKQSLTHPNN EEIVVPHSGN HKNPIASTLS IQETFSSNTI SSSVQEQQKG 120 SLLFGSDSNS TAKRSLNNVF SGPKAEAAAA EKSIKLMVGA NSDHHVETNL SVGLNSVLAI 180 SSCNKRPKIN AVSTLPFLVS QETSYSPLQW QVLGLKPAAG SIDDLDLELR LGSVLPKVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	3e-28	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO59068