PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO59032
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 734aa    MW: 83328.9 Da    PI: 6.1471
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO59032genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.97.1e-1203607301373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL+ cA+av+++d + a++l++++++++sp gd mqR+a+yf+ +L+ar a+s++++y+a    +ts    +++l+a++lf  ++P+ k+s++  N++
  OMO59032 360 LRTLLTLCAQAVATDDRKSANELMKQIRQHSSPIGDGMQRMAHYFVDGLEARSAGSGTQIYNAAVNMPTS---AADVLKAYHLFLAACPFKKLSNFFSNKT 457
               5789***********************************************************9999998...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I++ +e+++r+HiiDf+i +G+QWp+Ll+ L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef++ +a++++++++e+L+++++E
  OMO59032 458 IMNLAENATRLHIIDFGILYGFQWPCLLRRLSSRPGGPPKLRITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA-IAQKWDTIQIEDLKIDRDE 557
               ***************************************************9*****************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +++Vn++++l +llde+v +es+r++vL+l+++++P+v+++   +  ++++ F +rf eal +ys+lfd+le+++pre+ er+ +Ere++g+e++nv+ace
  OMO59032 558 VVVVNCMYRLRNLLDETVVVESPRNKVLNLIRKMKPDVFILGIVNGAYSAPFFITRFREALFHYSTLFDMLETNVPRETPERKLIEREIFGWEAKNVIACE 658
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               gaer+er et+++ + r+++aG++++pl+e++ k ak  +++++ + + ++e++ +l++gWk+r ++++S+W
  OMO59032 659 GAERIERPETYKQVQVRMMRAGLRQLPLNEEIWKMAKERVHTCYHKDFVIDEDNRWLLQGWKGRIVYALSSW 730
               ********************************************889************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    
MDPSLKGLFD SVDRFRLNED TVLALSSRNF DNRFKNENYV DVPTLQPAPF STNLALSSSM  60
NQQGDFNEDY DFSDVVLKYI SQILMEEDME DKTCMFKESS AALQAAEKSF YEVIGERYPP  120
SPKYEPKSYT DQSQESSDDQ SCWTCSTSSI NGYSSNLVDP GRNLDLREQR SLIFAPQVNS  180
QSSHSSSNST GSVVDGFVDS PVSTLRLPEV FSDSESVMQF RKGFEEASRF LPNSRSLFAD  240
VENDGLFLKE VTEEAKDMVV KVEQNEFSHD GSRRKKNHHP ADVDLDSGRS NKQSAVYTES  300
TVSSEMFDNV LLNCQSITDL QKAWQNETSK NVQQNGQSKG STGGKTRGKK QGGKKNVVDL  360
RTLLTLCAQA VATDDRKSAN ELMKQIRQHS SPIGDGMQRM AHYFVDGLEA RSAGSGTQIY  420
NAAVNMPTSA ADVLKAYHLF LAACPFKKLS NFFSNKTIMN LAENATRLHI IDFGILYGFQ  480
WPCLLRRLSS RPGGPPKLRI TGIDLPQPGF RPAERVEETG RRLANYAETF KVPFEFHAIA  540
QKWDTIQIED LKIDRDEVVV VNCMYRLRNL LDETVVVESP RNKVLNLIRK MKPDVFILGI  600
VNGAYSAPFF ITRFREALFH YSTLFDMLET NVPRETPERK LIEREIFGWE AKNVIACEGA  660
ERIERPETYK QVQVRMMRAG LRQLPLNEEI WKMAKERVHT CYHKDFVIDE DNRWLLQGWK  720
GRIVYALSSW VPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein