PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58963

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 349aa MW: 36617.5 Da PI: 8.8577

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58963	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.7e-39	74	134	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ OMO58963 74 PETTLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 134 67899*****************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MVFSSVPVYL DPPNWQQQPT QQAGLVTSDN NNHHNHQLPP PPPPPSGGGG GGGSGAIRPG 60 SMAERARLAK IPQPETTLKC PRCESTNTKF CYFNNYSLTQ PRHFCKTCRR YWTRGGALRN 120 VPVGGGCRRN KRSKGSSNRS KSSERQTGSS SSSSTLASNS CSDMLGHMAG APQLPLLPPL 180 HHLGDYNSGD IGVNFGGIQV AATGGGAGGG GGGGTSASNM DFPIGTSSSG SMLTNGLVEQ 240 WRSLQHVQQF PFLTSLEPAA GLYPFENEGL EAQSYGGHGQ LRSKPLESAI TQLAAVKMED 300 SQHQGLNLSR NFLGISGNDQ YWGGHGGGGG SNAWTDLSGF TSTSTTNLL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MVFSSVPVYL DPPNWQQQPT QQAGLVTSDN NNHHNHQLPP PPPPPSGGGG GGGSGAIRPG  60
SMAERARLAK IPQPETTLKC PRCESTNTKF CYFNNYSLTQ PRHFCKTCRR YWTRGGALRN  120
VPVGGGCRRN KRSKGSSNRS KSSERQTGSS SSSSTLASNS CSDMLGHMAG APQLPLLPPL  180
HHLGDYNSGD IGVNFGGIQV AATGGGAGGG GGGGTSASNM DFPIGTSSSG SMLTNGLVEQ  240
WRSLQHVQQF PFLTSLEPAA GLYPFENEGL EAQSYGGHGQ LRSKPLESAI TQLAAVKMED  300
SQHQGLNLSR NFLGISGNDQ YWGGHGGGGG SNAWTDLSGF TSTSTTNLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.2	1e-50	Dof family protein

Link Out ? help Back to Top
Ensembl	OMO58963