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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO58820 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 269aa MW: 31073.4 Da PI: 4.4838 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.8 | 4.3e-19 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t +q++ Le+ Fe ++++ e++ +LAk++gL+ rqV +WFqNrRa++k
OMO58820 40 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKEVGLQPRQVAIWFQNRRARWK 93
56689************************************************9 PP
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| 2 | HD-ZIP_I/II | 126.4 | 1.3e-40 | 39 | 131 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ +qv++LE+sFe e+kLeperK +la+e+glqprqva+WFqnrRAR+ktkqlEkdy+aL++++++lk++ ++L ke+++L++e+ +
OMO58820 39 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDYDALQASFNSLKADYDNLLKEKDKLKQEVVQ 131
69**************************************************************************************99865 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 269 aa Download sequence |
MVSFEDVNRA NRGSRSFFRA LDQEENGDED LDEYFHHPEK KRRLTVDQVQ FLEKSFEVEN 60 KLEPERKIQL AKEVGLQPRQ VAIWFQNRRA RWKTKQLEKD YDALQASFNS LKADYDNLLK 120 EKDKLKQEVV QLTDKLLVKE KEKGNSEEPQ QKLVVAEQES KVSMAVGCKQ EDMSSAKSDI 180 FDSESPHYTD GVVHSSLLEA ADSSYAFEPE QSDLSQDEED NLSKGLLHPP PIPYIFPKLE 240 DDGDYSDPPA TSCNFGFPLE DHAFWSWAY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 88 | 96 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 6e-48 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO58820 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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