PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO58744 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 25147.3 Da PI: 8.0827 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.4 | 3.7e-41 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lr+kC+++Cvlapyfp ++p+kfa vhk+FG snv k+l++l+ ++re+a++sl yeAe r+rdPvyG+vg+i+ lqq+l+ql+ +l+ +k+e OMO58744 7 PCAACKILRQKCTQECVLAPYFPPDNPQKFATVHKVFGKSNVAKILNELSVSQREEAVNSLSYEAEYRLRDPVYGCVGLISILQQRLKQLQYDLHFAKKE 106 7**********************************************************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MSSAKSPCAA CKILRQKCTQ ECVLAPYFPP DNPQKFATVH KVFGKSNVAK ILNELSVSQR 60 EEAVNSLSYE AEYRLRDPVY GCVGLISILQ QRLKQLQYDL HFAKKELATF VPPHHQALLS 120 IFTQIPPPIL PQDVGIGHSI SPSCSSSSGA MPLMGISSDP YRFEGTGSSF DNPSYQIQTR 180 DHDPHVHGGR SFNQALVLPQ PQQGQQAHQS QQQRSGRHDD RSFDSSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-61 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO58744 |