PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO58715

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 407aa MW: 46060.5 Da PI: 8.0702

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO58715	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.5	2.5e-11	71	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a+ k++g OMO58715 71 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 127 789****************88887786625555.******************98 PP
2	AP2	51.1	3.3e-16	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g OMO58715 170 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 221 79**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MEMVTAKSEL SPGRRRLCMA EGESIETKCI KRRRRDPSSV SLGGNNQQGE QQQQQQLQND 60 QPTATTVKRS SRFRGVSRHR WTGRFEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL 120 AAIKYWGTTT FTNFPVSDYE KEIEIMKTVT KEEYLASLRR RSSGFSRGVS RYRGVARHHH 180 NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR GINAVTNFDL STYIRWLKPG 240 ANHSLASEEL KTNLASQPMT TSNLLPTEQT NDLPLFGSNP FMVEALDSPK KQDILPKNIP 300 VSPLAKSSSA TALSLLLRSS MFNKLVEQNL NANFDETEEN DSKDLPEIVD NNGVGEMFYN 360 DIDHVPFMCS SNTDILPGLE SEESKLPLYN KTEQSLWNGA LNLPSLH

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MEMVTAKSEL SPGRRRLCMA EGESIETKCI KRRRRDPSSV SLGGNNQQGE QQQQQQLQND  60
QPTATTVKRS SRFRGVSRHR WTGRFEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL  120
AAIKYWGTTT FTNFPVSDYE KEIEIMKTVT KEEYLASLRR RSSGFSRGVS RYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR GINAVTNFDL STYIRWLKPG  240
ANHSLASEEL KTNLASQPMT TSNLLPTEQT NDLPLFGSNP FMVEALDSPK KQDILPKNIP  300
VSPLAKSSSA TALSLLLRSS MFNKLVEQNL NANFDETEEN DSKDLPEIVD NNGVGEMFYN  360
DIDHVPFMCS SNTDILPGLE SEESKLPLYN KTEQSLWNGA LNLPSLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRLCMAEGESIETKCIKRRRR
2	97	105	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	6e-73	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO58715