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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO58700 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | ERF | ||||||||
| Protein Properties | Length: 147aa MW: 16594.6 Da PI: 6.5207 | ||||||||
| Description | ERF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 54.8 | 2.4e-17 | 20 | 63 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
s+y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++
OMO58700 20 SKYLGVRRRP-WGRYAAEIRNPNT---KERHWLGTFDTAEEAAIAYDL 63
79********.**********933...5******************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 147 aa Download sequence |
MENFPSLIYR NPKRSSRQSS KYLGVRRRPW GRYAAEIRNP NTKERHWLGT FDTAEEAAIA 60 YDLSSISFSG IERARTNFYY PFLILPSPPP STPPPLPTTP ELEGQGGHDQ TFKEINPNII 120 SEDDESLVIA TILQSFAQSA NCSNFCP |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G12890.1 | 2e-29 | ERF family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO58700 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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