PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57701
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 602aa    MW: 65681.6 Da    PI: 6.3253
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57701genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-202479156
              TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              +++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  OMO57701 24 KKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79
              678899***********************************************998 PP
2START55.61.7e-182213453107
               HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
     START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
               a  a++el+++ + +ep+W kss    + +  +++ ++f++ ++       ++ea+r+sgvv+m++  lv  ++d++ +W e ++     a+t+evissg 
  OMO57701 221 ATNALEELLRLLQTNEPLWIKSStdgrDVLSLETYERIFPTPNThfkspnLRIEASRDSGVVIMNALALVDMFMDSS-KWVELFPtivsMAKTIEVISSGm 320
               678999*****************98887778888888887777799*******************************.******999999*********** PP

               .....EEEEEEEEXXTTXX-SSX.E CS
     START  89 .....galqlmvaelqalsplvp.R 107
                    g lqlm+ elq+lsplv+ R
  OMO57701 321 mgshsGSLQLMYEELQVLSPLVStR 345
               *********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MEYGGGGGSG SGGDHDASDP SRRKKRYHRH TANQIQRLEA MFKECPHPDE KQRLQLSREL  60
GLAPRQIKFW FQNRRTQMKA QHERADNCAL RSENDKIRCE NIAIREALKN VICPSCGGPP  120
VTEDFYFDEQ KLRMENAQLK EELDRVSSIA AKYIGRPISQ LPPVQPIHIS SLDLTMASFG  180
GVAAPSLDLD LLPGSSSAMP NLPFQPIVVS DMDKSLMTDI ATNALEELLR LLQTNEPLWI  240
KSSTDGRDVL SLETYERIFP TPNTHFKSPN LRIEASRDSG VVIMNALALV DMFMDSSKWV  300
ELFPTIVSMA KTIEVISSGM MGSHSGSLQL MYEELQVLSP LVSTRTSTRD LGGVIPSPDG  360
KRSMMKLAQR MVNNFCTSIS TSNSHQWTTL SGVNEVGVRV TVHKSCDPGQ PNGVVLSAAT  420
TFWLPVTPQN VFNFFKDERT RPQWDVLSNG NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN  480
NMLILQESCI DSSGSLVVYC PVDLPAINVA MSGEDPSYIP LLPSGFTISP DGHPEQGDGA  540
STSSSSNGNM GRCGGSLITV AFQILVSSLP SAKLNMESVT TVNNLIGTTV QQIKTALNCP  600
GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-145HD-ZIP family protein