PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57419
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 364aa    MW: 39871.1 Da    PI: 7.0702
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57419genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-073760226
              -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
              + +lC++++  G C++Gd+C + H+
  OMO57419 37 GVSLCKYWMS-GRCSRGDSCWYLHS 60
              789*******.*********99996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MEVNGKGRNF ANTDLCSTSA KGCRPRNSNA STPKPPGVSL CKYWMSGRCS RGDSCWYLHS  60
WSLGHGFTHL ARLEGHKKAV KGIALPLGSD KLYTGSSDGT ARLWDCITGK CAYSNNLGDE  120
VWSMITEGHW VFIGMKDFIK ALNIQTSNEI NLEGPVGQVY AMAVANDKLF AGTQNGDIMA  180
WRASSEANPF HLAASLQGHT RAVLCLSVGE NMLFSGSADN TIRVWDTETL QCIKTLNGHA  240
DAVTSVIHCN GHLFSCSLDG TIKVWFASEG QQNWEVIHTH KEETGVLTLC GMNDAEMKPV  300
LCCSCNDNTV RLYDLPSFTE RGRLFSKREV RVIERGPSGL FFTGDAAGSL SVWMWVQKPQ  360
EEAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323332RLFSKREVRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-130C3H family protein