PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO57367
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 384aa    MW: 42083.6 Da    PI: 9.1158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO57367genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13313358655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  OMO57367 313 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 358
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    
MDSSTHPSYQ NPNNQPNSGL LRFRSAPSSL LANFTDSLDC GVNKGGFDSD RLISRFMNSS  60
AGNSEIEDKS GAEAAVNYSN SQQSYSGLPP HYPRQTSATT SSAMDSSYEL LGMNHQSHGK  120
PVNSTLMRQS SSPAGLFANL SVQNGYASMK GLGNYCGVNS TTTNGELSPS SNRLKNQISF  180
SSRLPSSLGM LSQISEIGNE SIGANSPDDG KLGNSNSDAR FYGTGYQQYG SWNDSGPFTE  240
NFSGLKRTQD NERKFLSAGQ NGDLGNRVHV LSHHLSLPKT SNEMAAMEKF LHFQDSVPCK  300
IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKDLQKQ  360
FKTLSDNRAN CKCLHIQKPV PNQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-117bHLH family protein