PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO57005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GATA | ||||||||
Protein Properties | Length: 383aa MW: 42115.9 Da PI: 6.2388 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.6e-19 | 302 | 336 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l OMO57005 302 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 336 *******************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence |
MLYQTHHHPF LFQFRSSFTS ISPLPPSTSP SLLPSSLQEM ECVEGALKTS FRKEMALKSS 60 PQTFLDDIWV VNGGQNGVSC DDFSVDDLLD FTNEEGLLEQ QEKHEEEEEE EEVPIPSSSS 120 SPKRQKLCQD DHISNDTTNF DYGSLSTNEL AVPADDVANL EWLSHFVEDS FSEHSTAYPT 180 GTLTTKPKLP ADKEPEQEKP VTTTCFQTPV PAKARSKRAR TGARIWSLVP SPSLTESSSS 240 STSSTSSSSP SSPWLFYPYG GYGSTFEPSD PLSVEKPPVK KHKKKLSTDS AGGNGTQPTR 300 RCSHCGVTKT PQWRAGPMGA KTLCNACGVR FKSGRLLPEY RPACSPTFSS ELHSNHHRKV 360 LEMRRKKEGA EPGLTPPIVP SFG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 286 | VKKHKKKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 9e-75 | GATA family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO57005 |