PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56998

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SRS

Protein Properties

Length: 349aa MW: 37223.7 Da PI: 6.872

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56998	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	234.7	1.5e-72	115	265	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkelet 102 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpa+krrerqqql a+++++++ + + +++kr+re+ ++s+l++t+ + ++ + le OMO56998 115 GGGMSCQDCGNQAKKDCPHMRCRTCCKSRGFECQTHVKSTWVPASKRRERQQQLVALQQQQQQLQlRGDNPKRQREN--PTSSSLACTTRNLPTNASGLEL 213 5789************************************************999988776655488889999987..566677777777777788999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++P+evss+avfrcvrvssvddg++++aYqtav+igGhvfkGiLydqG+e+ OMO56998 214 GNFPAEVSSSAVFRCVRVSSVDDGDDQYAYQTAVNIGGHVFKGILYDQGPES 265 **************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MAGFFSLGGG RGSSSQEQED QHNNNNNPPT EIPPESWFWY KNEDISYKGT FELWQQQQIF 60 QRQQQEQQQQ QDLYTSAAGL GVGPSRNNLS DDSSSRSAAA FMMMRSSGAA GGGGGGGMSC 120 QDCGNQAKKD CPHMRCRTCC KSRGFECQTH VKSTWVPASK RRERQQQLVA LQQQQQQLQL 180 RGDNPKRQRE NPTSSSLACT TRNLPTNASG LELGNFPAEV SSSAVFRCVR VSSVDDGDDQ 240 YAYQTAVNIG GHVFKGILYD QGPESGYNNM AAAGESSSGG GSGIQALNLI TAGPTAATNT 300 ASLAANASGG SVTAASSSST AAFLDPSSLY ATPLNTFMAG TQFFPNPRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MAGFFSLGGG RGSSSQEQED QHNNNNNPPT EIPPESWFWY KNEDISYKGT FELWQQQQIF  60
QRQQQEQQQQ QDLYTSAAGL GVGPSRNNLS DDSSSRSAAA FMMMRSSGAA GGGGGGGMSC  120
QDCGNQAKKD CPHMRCRTCC KSRGFECQTH VKSTWVPASK RRERQQQLVA LQQQQQQLQL  180
RGDNPKRQRE NPTSSSLACT TRNLPTNASG LELGNFPAEV SSSAVFRCVR VSSVDDGDDQ  240
YAYQTAVNIG GHVFKGILYD QGPESGYNNM AAAGESSSGG GSGIQALNLI TAGPTAATNT  300
ASLAANASGG SVTAASSSST AAFLDPSSLY ATPLNTFMAG TQFFPNPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-82	SRS family protein

Link Out ? help Back to Top
Ensembl	OMO56998