PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO56900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 11160.4 Da PI: 8.8993 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.3e-08 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+e +l+ +a + ++ +W++Ia+ +g g ++++k + OMO56900 14 NWTAEQNKLFENALVTYDKDipdRWRRIAKLVG-GTNEEEVKRQY 57 8********************************.*9****99877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 95 aa Download sequence |
MESTQHFSQS YNSNWTAEQN KLFENALVTY DKDIPDRWRR IAKLVGGTNE EEVKRQYEIL 60 LEDIKRIESG KVPLPKYRRT AGSSKTNDIA NEQQR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-30 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO56900 |