PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56878
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 609aa    MW: 67278.5 Da    PI: 4.764
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56878genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.41.4e-1142426092374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                ++Ll+cA+ +++++ e+a + L rl+e +s  gdp++R+a+yfteAL +r++    +  k l+  et+   s++ + a+k++++++P+ kf+hltaNqaI
  OMO56878 242 LKALLDCAR-IAESEPERAIKSLIRLRESVSDCGDPTERVAFYFTEALYSRVSL---QAEKRLTILETT---SEDFTLAYKALNDACPYSKFAHLTANQAI 335
               689*****9.77779999999********************************9...778888888888...899************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               lea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p  +Ri g+ +p  g   + +l++tg+rL++fA+ l+++fef++ + + +++l+  ++rv+ +E
  OMO56878 336 LEATERASKIHIVDFGIVQGVQWAALLQALATRSAGKPtLIRISGIPAPVLGknPAPSLHATGNRLRDFAKLLDLNFEFEP-ILTPIQELDEFSFRVDDDE 435
               **********************************7777589*******998888999************************.799**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +laVn++lql++llde+  + +   + L+l ksl P++v++ e ea++n+  F++rf +al+yysa+f+sle +lpres++ri vEr llgr+i  v+  e
  OMO56878 436 VLAVNFMLQLYNLLDETPVTVQ---TALRLAKSLDPEIVTLGEYEASLNRVGFANRFKNALRYYSAMFESLEPNLPRESQDRIQVERLLLGRRIAGVIGPE 533
               **************99998888...9*************************************************************************99 PP

      GRAS 302 gae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
               +a+ rrer+e +e+W+  +e+aGF++v ls++a +qak ll +++ s  +++ e++  ++ l Wk+ pL++vS+Wr
  OMO56878 534 EADsRRERMEDKEQWKVLMESAGFETVGLSHYAISQAKILLWNYNySSSFSLVESQPGFLsLSWKEVPLLTVSSWR 609
               9888*****************************************9999****99999888**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ QHHHQQQQLL GLNPFSLNPW PNTHHGVSGS  60
PNLGYGLSGP GFADPFQGDT GEGFQFPNME HHSSGFRFPD FGGAAGGEFD SDEWMDTLMN  120
SGDSTDSSNL PSGCDAWHNN ADFGLYGADP FSACPNRMSV GCSPPSDLNR VLFTSETQKN  180
PNTTLQAQTQ LPTWAPSPPP PLPQVTVKET KTSAPPSQTQ SKNDAVGVSS GCPDIESAPP  240
LLKALLDCAR IAESEPERAI KSLIRLRESV SDCGDPTERV AFYFTEALYS RVSLQAEKRL  300
TILETTSEDF TLAYKALNDA CPYSKFAHLT ANQAILEATE RASKIHIVDF GIVQGVQWAA  360
LLQALATRSA GKPTLIRISG IPAPVLGKNP APSLHATGNR LRDFAKLLDL NFEFEPILTP  420
IQELDEFSFR VDDDEVLAVN FMLQLYNLLD ETPVTVQTAL RLAKSLDPEI VTLGEYEASL  480
NRVGFANRFK NALRYYSAMF ESLEPNLPRE SQDRIQVERL LLGRRIAGVI GPEEADSRRE  540
RMEDKEQWKV LMESAGFETV GLSHYAISQA KILLWNYNYS SSFSLVESQP GFLSLSWKEV  600
PLLTVSSWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein