PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56874
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 548aa    MW: 61831.4 Da    PI: 6.7922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56874genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3082.2e-941915472374
      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               +e L+++A+++++++l+laq +Larl+++ +sp+g+p+qR+a+yf+eAL++ l++      ++ p++ +s+ + +++++a+k+fs + Pi+ f h+t+Nqa
  OMO56874 191 IEELIRAADCFDTHELQLAQVILARLNQRlRSPSGKPLQRAAFYFKEALQSLLTG------STRPTRLSSWGEIVQTIKAYKAFSGINPIPMFNHFTTNQA 285
               679*************************99*************************......889999999999**************************** PP

      GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               +lea++g+   +HiiDfdi+ G+Q+++L++++a+R+ ++   +R+T+v+++e   + e++ ++++L +fA+ l+++f++++++ +++e+l+l+++++  gE
  OMO56874 286 LLEALDGSaPLIHIIDFDIGLGGQYASLMREIAERSdHSCKFIRVTAVVPEE--YAIETRLIKDNLFQFAQDLKLRFQIEFVLLRTFEMLSLKAFKFIDGE 384
               ********7889************************555669********66..99999****************************************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
               ++a+ l+ +++r l  s+++    +++L+ +++l+  vvv+v++e  ++++++sF + f++ le+y+++f+sl+a +    e+ +k+E  ll+++i  +v 
  OMO56874 385 KTAILLSPSIFRCL--SLNV----TAFLSDLRRLNLSVVVFVDSEvwMETGTTSFRKNFVNGLEFYAMMFESLDAAV-GGGEWVRKIEMLLLRPRILAAVE 478
               *************9..4444....56*******************777889*************************8.5568899*************998 PP

      GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                + ++      t+  Wre +  aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W++ +L+++SaWr
  OMO56874 479 SAARR------TAPPWREVFVGAGMRAVHLSQFADFQAECLLGKVHVRGFHVAKRQAELVLCWHESALIATSAWR 547
               88876......89*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MRVPVTNSPQ NNNHCLSPKP NNNNNNNNVG ARNITFHGLN TVPTSCYEPT SVLDLRRSPS  60
PVTEKRPADV SNQVAPAVAP PLEWDEHVLR NMDWDSIMKD LGLDDESVPA IKPNFINPTS  120
CENHIQNLPE FASSELTHHS TSVHSDFNNL YDFYSGLNQN PSHHQNINLD HNISNFHHHT  180
TGNFNLGFDF IEELIRAADC FDTHELQLAQ VILARLNQRL RSPSGKPLQR AAFYFKEALQ  240
SLLTGSTRPT RLSSWGEIVQ TIKAYKAFSG INPIPMFNHF TTNQALLEAL DGSAPLIHII  300
DFDIGLGGQY ASLMREIAER SDHSCKFIRV TAVVPEEYAI ETRLIKDNLF QFAQDLKLRF  360
QIEFVLLRTF EMLSLKAFKF IDGEKTAILL SPSIFRCLSL NVTAFLSDLR RLNLSVVVFV  420
DSEVWMETGT TSFRKNFVNG LEFYAMMFES LDAAVGGGEW VRKIEMLLLR PRILAAVESA  480
ARRTAPPWRE VFVGAGMRAV HLSQFADFQA ECLLGKVHVR GFHVAKRQAE LVLCWHESAL  540
IATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-180GRAS family protein