PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO56859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 203aa MW: 23510.7 Da PI: 7.5696 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.9e-19 | 49 | 103 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ OMO56859 49 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 103 45699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119.1 | 2.3e-38 | 49 | 139 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+ls+eqv+lLE +F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+d + +++rLe+ev +L+e+l OMO56859 49 KKRKLSQEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSAHDGAVLDKCRLESEVLKLKEQLC 139 9***************************************************************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MKELEDHMAL ISQMYPGVYT QMATQQGESK PRRRRKKNKG GENSLAGAKK RKLSQEQVNL 60 LELNFGNEHK LESERKDRLA SELGLDPRQV AVWFQNRRAR WKNKKLEEEY SKLKSAHDGA 120 VLDKCRLESE VLKLKEQLCE AEKEIQRLTE RVDGVSSNSP ISSSLSMEAM QEPPFLGEFG 180 VEDAFYIPEN SYIHGMEWMN LYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 51 | RRRRKKNKGGENSLAGAKKR |
2 | 32 | 52 | RRRRKKNKGGENSLAGAKKRK |
3 | 33 | 52 | RRRRKKNKGGENSLAGAKKR |
4 | 33 | 53 | RRRRKKNKGGENSLAGAKKRK |
5 | 34 | 54 | RRRRKKNKGGENSLAGAKKRK |
6 | 35 | 55 | RRRRKKNKGGENSLAGAKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-66 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO56859 |