PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56821

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 722aa MW: 78023.4 Da PI: 6.9276

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56821	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	476	513	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + OMO56821 476 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 513 664559******************************88 PP
2	BELL	94	1.3e-30	353	407	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ OMO56821 353 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 407 7***************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MSQDYHHQAA GIFSFSNGFD RSQEQQQQQQ HHLATQIRRD KLRVQGFEQP PPPLVGIEEE 60 ESSGLPVYET AGMLSEMFNF PPGVAAAAAT ASGELLDQSV QANYRTHRGH EWYSSNRQGV 120 VGQLGESKSH NNHHQQLPSI NADSAAAMHL FLMNPSHPRS PSPPPPPSAT SSNTLHMLMP 180 SPSNNSLQGF NVSGPGGGGG FATSTVLSPP PQFTWVHDSA QGGNTNPSEM GGTVVEGQGL 240 SLSLSSSLQH LEAAKAEELR MGDGGLLYYN QGAGGSSSAA AAQFHYKNLS GHHLQQQGGV 300 GGQNHQVHVG FGSSLGMVNV LRNSKYVKAA QELLEEFCSV GRAADRIEHQ RRKVDRRYNH 360 YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK DAISAQLKQS CELLGEKDGA 420 GTSGITKGET PRLRMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL 480 HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQETKEE DGDKERPNNS 540 SNNSNNNAQT STPSTTAGAG AGAGGAAAAS TPTTPTTTTP AGKRSEINAH ENDPSLIAIN 600 TQQCFSENQA KQSTIITTTT ATPPCTSTTT ATEVAPPISQ PFATTPTTHD SDIHQRLVDD 660 TCRRGSIVAA DYGTTPGNTD IGSTLIRFGT TAGDVSLTLG LRHAGNMPEK TSSFSVRDFG 720 GC

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MSQDYHHQAA GIFSFSNGFD RSQEQQQQQQ HHLATQIRRD KLRVQGFEQP PPPLVGIEEE  60
ESSGLPVYET AGMLSEMFNF PPGVAAAAAT ASGELLDQSV QANYRTHRGH EWYSSNRQGV  120
VGQLGESKSH NNHHQQLPSI NADSAAAMHL FLMNPSHPRS PSPPPPPSAT SSNTLHMLMP  180
SPSNNSLQGF NVSGPGGGGG FATSTVLSPP PQFTWVHDSA QGGNTNPSEM GGTVVEGQGL  240
SLSLSSSLQH LEAAKAEELR MGDGGLLYYN QGAGGSSSAA AAQFHYKNLS GHHLQQQGGV  300
GGQNHQVHVG FGSSLGMVNV LRNSKYVKAA QELLEEFCSV GRAADRIEHQ RRKVDRRYNH  360
YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK DAISAQLKQS CELLGEKDGA  420
GTSGITKGET PRLRMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL  480
HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQETKEE DGDKERPNNS  540
SNNSNNNAQT STPSTTAGAG AGAGGAAAAS TPTTPTTTTP AGKRSEINAH ENDPSLIAIN  600
TQQCFSENQA KQSTIITTTT ATPPCTSTTT ATEVAPPISQ PFATTPTTHD SDIHQRLVDD  660
TCRRGSIVAA DYGTTPGNTD IGSTLIRFGT TAGDVSLTLG LRHAGNMPEK TSSFSVRDFG  720
GC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-146	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO56821