PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56722
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 322aa    MW: 35371.5 Da    PI: 7.4611
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56722genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.6e-4371061100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++ +l+ +k+e
  OMO56722   7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQMQLDLNNAKKE 106
               7**********************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFANVH KVFGASNVAK LLNELNASQR  60
EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQMQLDL NNAKKELATF IGPQAMLPIL  120
QPPPFNLPQH VGNPSSSAVM QHNMMPMMGI PSAAAAAAAS HGGPLVIREP QQQQQIFEAQ  180
QQLAAVVAAR EQQEMFRGYE QAPHHQGQQQ QEIVRFNSGF EGTGSVTATG FNQITTAAAM  240
SPSLALGSFD NPYQIHQTQQ QDHHHHHSHG GHSLQAQLLL QPQQGQTPQQ AQQNQQTHQN  300
QNQQQQQQRS GSEEGRSIGP SC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-91LBD family protein