PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56671
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 279aa    MW: 31083.5 Da    PI: 10.1225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56671genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08178218954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  OMO56671 178 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 218
               699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDVDMMKSSS STTEDHMDMM TMMMQMEKLP EFLDHPFQGS DQIHFSNGIT TTTSTSILPT  60
PPIYPNPNPN VSSSSLNNLM TLQPSTLSFM GNNINNPVQE PILSNNKFKY PSPFNNNNGG  120
NSSYTSSTVD NKKNSMAAMR EMIFRIAAMQ PIHIDPESIK PPKRRNVKIS KDPQSVAARH  180
RRERISERIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKR QVQSLEQASS VNSRPMGSVG  240
FPSAAMAAAN VGYSSLVKAC QPSHHHQVVG NMQNLQMLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-46bHLH family protein