PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56628
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family AP2
Protein Properties Length: 431aa    MW: 48083.4 Da    PI: 6.4537
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56628genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-18158207155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s+y+GV++++++grW+++I+d      + k+++lg f+t+ eAa+a+++a+ k +g
  OMO56628 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGLFDTEIEAARAYDRAAIKCNG 207
               78*******************......55**********99**********99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MWDLNDSPDQ PRDDESEGCS SQKTSIDGDD DKGKRVGSVS NSSSSAVVVE DGSEEEDGER  60
VRGTVAFKKR SSKIFGFSVP YEEESMDSDP APVTRQFFPL DQDPEMGASS GGSGPGGFPR  120
AHWVGVKFCQ SEPVAAAKSV EVSQPMKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGLFDT EIEAARAYDR AAIKCNGKDA VTNFDPSIYE NELNSETSSN NNNAGDHNLD  240
LSLGNSTSKQ NNLEFGSDRQ NAMVNQHSLP PEVDWRYRGF RPSKLNLQKE GFRSDDPNHR  300
LRTDGYSEAE TMQLLSQTHI QSPVSIKSNN NEMPRYGQLR RPGENHMFHI LPPHINQQAY  360
QIQFPSSSNG GRIGSELSLS SSEQQQWQSS PHQLFANAAA SSGFPSQINR PNSHNHNWLQ  420
KNGFHSLMRP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.17e-31AP2 family protein