PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56624
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 180aa    MW: 20152.4 Da    PI: 10.1194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56624genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-172372255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  OMO56624 23 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 72
              59*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MENGTGVVVA ATRESSRKST ERPYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPVAAA  60
RAYDTAVFYL RGPSARLNFP DLLAGEKVGG GSLGGDLSAA SIRKKAIEVG SRVDAIEAAQ  120
LHHHHHNHNH HHGHSYNINH HQNYNRSFGD ELKPSGGFLQ RVDLNKLPDP EDSDGEWERK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-52ERF family protein