PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO56509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 433aa MW: 48346.4 Da PI: 5.4245 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 305.3 | 1.4e-93 | 31 | 430 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfshlt 97 ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRla f+++L r a+ +++k l++ ++++ n s +++ +++ f++++P+++f++ + OMO56509 31 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLACAFLRGLIVRAAK--VGTCKMLAAMANANCNLSINIHTFSVielasFVDLTPWHRFGFTA 129 79****************************************************..7777777777777667555555554445588************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......vakrle 187 aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp +++T+ + ++++ ++ee+g++L +fA++ ++ +ef+v+ ++ +e OMO56509 130 ANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLVKLTVASGATEDvpplLDLSYEELGSKLVNFARSRNIVLEFRVVpssyadgFSSLIE 230 **************************************************99888899988999************************9985554444555 PP GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +l++++L + gEal++n++++lh+++ + +++s r+ +Lk+v++l P++v++v+++ad +s++++ r+ a++y + +d+++ OMO56509 231 QLRMQHLVYAEtGEALVINCHMMLHYIPeetfspipntnsnnpYSFEPTSSLRTMFLKAVRGLDPTIVILVDEDADFTSNNLVCRLRAAFNYLWIPYDTVD 331 556666655559***************************988866666777899*********************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + lp+ s++r+++E+ + ++i+nv+a+eg +r+er e +++W +r+++a F+ v+++e+a++++k++l +++ g+ +++e++ lvl+Wk++++v+++aW OMO56509 332 TFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGVSFGEEAVSEVKTMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 430 ****************.********************************************************.8999*********************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence |
MNKNQIPRAR PWPGFPTSKG LNSFGDANCM EQLLVHCANA IESNDATLAQ QILWVLNNIA 60 PPDGDSNQRL ACAFLRGLIV RAAKVGTCKM LAAMANANCN LSINIHTFSV IELASFVDLT 120 PWHRFGFTAA NAAILEAVEG YSVIHIVDLS LTHCMQIPTL IDAIANRLEG PPLVKLTVAS 180 GATEDVPPLL DLSYEELGSK LVNFARSRNI VLEFRVVPSS YADGFSSLIE QLRMQHLVYA 240 ETGEALVINC HMMLHYIPEE TFSPIPNTNS NNPYSFEPTS SLRTMFLKAV RGLDPTIVIL 300 VDEDADFTSN NLVCRLRAAF NYLWIPYDTV DTFLPQGSKQ RQWYEADICW KIENVIAHEG 360 LQRVERLEPK SRWVQRMRNA NFRGVSFGEE AVSEVKTMLD EHAAGWGLKK EEDDLVLTWK 420 GHNVVFATAW LPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO56509 |