PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56509
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 433aa    MW: 48346.4 Da    PI: 5.4245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56509genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.31.4e-93314302373
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevsPilkfshlt 97 
               ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRla  f+++L  r a+   +++k l++ ++++ n s +++ +++     f++++P+++f++ +
  OMO56509  31 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLACAFLRGLIVRAAK--VGTCKMLAAMANANCNLSINIHTFSVielasFVDLTPWHRFGFTA 129
               79****************************************************..7777777777777667555555554445588************** PP

      GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......vakrle 187
               aN aIleaveg + +Hi+D+++++++Q p+L++a+a+R egpp +++T+ + ++++       ++ee+g++L +fA++ ++ +ef+v+        ++ +e
  OMO56509 130 ANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIANRLEGPPLVKLTVASGATEDvpplLDLSYEELGSKLVNFARSRNIVLEFRVVpssyadgFSSLIE 230
               **************************************************99888899988999************************9985554444555 PP

      GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
               +l++++L   + gEal++n++++lh+++                +  +++s r+ +Lk+v++l P++v++v+++ad +s++++ r+  a++y +  +d+++
  OMO56509 231 QLRMQHLVYAEtGEALVINCHMMLHYIPeetfspipntnsnnpYSFEPTSSLRTMFLKAVRGLDPTIVILVDEDADFTSNNLVCRLRAAFNYLWIPYDTVD 331
               556666655559***************************988866666777899*********************************************** PP

      GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               + lp+ s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+ v+++e+a++++k++l +++  g+ +++e++ lvl+Wk++++v+++aW
  OMO56509 332 TFLPQGSKQRQWYEAD-ICWKIENVIAHEGLQRVERLEPKSRWVQRMRNANFRGVSFGEEAVSEVKTMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 430
               ****************.********************************************************.8999*********************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    
MNKNQIPRAR PWPGFPTSKG LNSFGDANCM EQLLVHCANA IESNDATLAQ QILWVLNNIA  60
PPDGDSNQRL ACAFLRGLIV RAAKVGTCKM LAAMANANCN LSINIHTFSV IELASFVDLT  120
PWHRFGFTAA NAAILEAVEG YSVIHIVDLS LTHCMQIPTL IDAIANRLEG PPLVKLTVAS  180
GATEDVPPLL DLSYEELGSK LVNFARSRNI VLEFRVVPSS YADGFSSLIE QLRMQHLVYA  240
ETGEALVINC HMMLHYIPEE TFSPIPNTNS NNPYSFEPTS SLRTMFLKAV RGLDPTIVIL  300
VDEDADFTSN NLVCRLRAAF NYLWIPYDTV DTFLPQGSKQ RQWYEADICW KIENVIAHEG  360
LQRVERLEPK SRWVQRMRNA NFRGVSFGEE AVSEVKTMLD EHAAGWGLKK EEDDLVLTWK  420
GHNVVFATAW LPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein