PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56459
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 506aa    MW: 57214.9 Da    PI: 5.7045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56459genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.42.8e-1071255053374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               + Lle A+a+++++  ++q+l++ l+el+sp+gd+ q+l ++f++AL +r+++s++++y++l++ ++++ + +++ +++  f+evsP+ +f+h+++N aI+
  OMO56459 125 DILLETATAIADRNSGRVQQLMWMLNELSSPYGDTDQKLGSHFLQALFSRMTDSGERCYRTLASVSEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIM 225
               689***********************************************************8888876665555555556******************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak.rledleleeL 194
               ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+++  ++g          ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l dl+l+eL
  OMO56459 226 EAFEGETKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTIVVRKNGavsgggsaaVQKVMKEIGNRMEKFARLMGVPFKFNVIHHAgDLCDLDLSEL 326
               *********************************************9998899****999999*************************7777********** PP

      GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellg 291
               ++k++Eala+n+v  lh++     +++++rd +++ +++l+P+v++vve+ead++ +    +F+++f e+l+++ + f++l+++++r+s+er ++Er+  g
  OMO56459 327 DIKEDEALAINCVNTLHSIT----AVDNRRDIMISNFRRLQPRVITVVEEEADLDVGvdglEFVKGFQECLRWFRVYFEALDESFSRTSNERLMLERA-AG 422
               *******************8....77888999*******************8885444555*************************************.** PP

      GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374
               r+iv++vac  +e++er+e++ +W++r++++GF++v+ls+++ +++++llr++k +g  + ++ ++ ++l Wkd+p+v++SaWr
  OMO56459 423 RAIVDLVACPPSESIERRESATRWSRRFHASGFSAVALSDEVCDDVRALLRRYK-EGwSMAQCPDAGIFLSWKDQPVVWASAWR 505
               ******************************************************.66255568899999**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MDTLFRLVSL QSSDQSFNSS RTSSSSRSSR QNHHYQQEDE ECFNFFMDEE DFSSSSSKHY  60
YPYHHQQQQP HPSTTTATAT TPTTTTTNTS TPTTTHHGGF DPSDHFSFSP ARDLNFDFSG  120
KWATDILLET ATAIADRNSG RVQQLMWMLN ELSSPYGDTD QKLGSHFLQA LFSRMTDSGE  180
RCYRTLASVS EKTCSFESTR KMVLKFQEVS PWTTFGHVAC NGAIMEAFEG ETKLHIIDIS  240
NTYCTQWPTL LEALATRTDE TPHLRLTTIV VRKNGAVSGG GSAAVQKVMK EIGNRMEKFA  300
RLMGVPFKFN VIHHAGDLCD LDLSELDIKE DEALAINCVN TLHSITAVDN RRDIMISNFR  360
RLQPRVITVV EEEADLDVGV DGLEFVKGFQ ECLRWFRVYF EALDESFSRT SNERLMLERA  420
AGRAIVDLVA CPPSESIERR ESATRWSRRF HASGFSAVAL SDEVCDDVRA LLRRYKEGWS  480
MAQCPDAGIF LSWKDQPVVW ASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein