PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56419

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 598aa MW: 64222.3 Da PI: 8.5492

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56419	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	220	264	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OMO56419 220 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 264 79****************************************985 PP
2	QLQ	52.9	1.1e-18	150	186	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ an+ vP++Ll +++k OMO56419 150 GPFTPSQWIELEHQALIYKYITANVAVPSNLLIPLKK 186 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MDFGVLGFEG NIVGPDNGAA SQTQTQPFDS KSKLAAGSGF TKQERSSVSA EDRWKSSKIP 60 RTDDLSTQKT MPLHQLTPLL RSNSLVSPPD TRQQEHMLSF SSLKSEVPFI TKDGVFSYYQ 120 HPPSTYSRNA GYGSGSLNAS MHGPLSGVRG PFTPSQWIEL EHQALIYKYI TANVAVPSNL 180 LIPLKKSLYP YGFSSSSAGS LPPNSLGWGS FHLGYSGSTD PEPGRCRRTD GKKWRCSRDA 240 VADQKYCERH INRGRHRSRK PVEGQSGHAA SGTGNSKVVP MSAAMSASVI TSGGATNSLA 300 SAQQHQFKNL QSAAAANPSA DTLVNRVQDP RGLSMVSSTT NLKSNNSKFT ITKQGIPFVE 360 ASQSDFGLVA CDSLVNPSHR SPYMNSKEYG PFLDFSDQET QDQNPLRQFM DDWPKDQSSR 420 SVITWSEELK PEWTQLSMSI PIASSEFSSS SSSPAQEKLA LSPLRLSREF DPVQMGLGVN 480 GDIGDHHQKQ ANWIPISWGS SMGGPLGEAL TNTTSNGGNC KNSSALNLLP EGWDGSPQLG 540 SSPTGVLHKA PFGSLSNSSS GSSPIAENKK PHDGASLCDE VLRSTLVSSA SIPSVIRS

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MDFGVLGFEG NIVGPDNGAA SQTQTQPFDS KSKLAAGSGF TKQERSSVSA EDRWKSSKIP  60
RTDDLSTQKT MPLHQLTPLL RSNSLVSPPD TRQQEHMLSF SSLKSEVPFI TKDGVFSYYQ  120
HPPSTYSRNA GYGSGSLNAS MHGPLSGVRG PFTPSQWIEL EHQALIYKYI TANVAVPSNL  180
LIPLKKSLYP YGFSSSSAGS LPPNSLGWGS FHLGYSGSTD PEPGRCRRTD GKKWRCSRDA  240
VADQKYCERH INRGRHRSRK PVEGQSGHAA SGTGNSKVVP MSAAMSASVI TSGGATNSLA  300
SAQQHQFKNL QSAAAANPSA DTLVNRVQDP RGLSMVSSTT NLKSNNSKFT ITKQGIPFVE  360
ASQSDFGLVA CDSLVNPSHR SPYMNSKEYG PFLDFSDQET QDQNPLRQFM DDWPKDQSSR  420
SVITWSEELK PEWTQLSMSI PIASSEFSSS SSSPAQEKLA LSPLRLSREF DPVQMGLGVN  480
GDIGDHHQKQ ANWIPISWGS SMGGPLGEAL TNTTSNGGNC KNSSALNLLP EGWDGSPQLG  540
SSPTGVLHKA PFGSLSNSSS GSSPIAENKK PHDGASLCDE VLRSTLVSSA SIPSVIRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-121	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO56419