PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56377
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 348aa    MW: 38907.7 Da    PI: 6.9643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56377genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-06182208430
               HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
       HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                h ++Er+RR+++ ++f  L  ++P +
  OMO56377 182 DHIMAERKRREKLSQRFIALSAIVPGL 208
               699**********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MDSSSAKWLS ELGMDEYNII HHCHMNSFAE LTTAEDIAAA LGTVKQSFSS ESYSSYPNLN  60
TKNTASLENF DRPAKQLKTS SSWNSSTTTE HVPQRPSSPT SQILSFERTS SLPSNSHQQF  120
YNIDPHPGKP KDETVTSGNM NFLTPMITPN GPFENTNYAP KINNQGVKRT HSMTRSPSHA  180
QDHIMAERKR REKLSQRFIA LSAIVPGLKK YVKHLQERLQ VLEEQTKKRT VESVVFVKKS  240
QLSADDESSS CEENSDGQST SDAALPEIEA RVSDNDVLIR IHCEKQKGFM AKILSEIENL  300
HLTVVNSSVL PFGNSTLDLT IIAQKDAEFS MTVKDLVKDL RVALLKFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-62bHLH family protein