PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO56366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21804.8 Da PI: 10.3728 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.8 | 1.6e-09 | 21 | 60 | 9 | 48 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 rq +skRr + KA+EL LC+++ +++f ++g+l + OMO56366 21 RQSAWSKRRSSFFYKASELYALCAVQNVLLVFVPSGNLVT 60 8999********************************9976 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence |
MAGLPRKGYR NPRGNQQAGA RQSAWSKRRS SFFYKASELY ALCAVQNVLL VFVPSGNLVT 60 NRLVYCGKAD VDQVRRARAE KEASLRKLSE EYAILQQQME ALELRSRRLH QRMMENGCQG 120 RSLMGRPIDE LCIEEIPTVR PTLQEYAEAL RKHTQKQKRL SKQAASMLAG PNDASLSKSN 180 EGDSSGGFND RER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-08 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO56366 |