PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56350
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 356aa    MW: 40542.4 Da    PI: 4.5447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56350genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12187230654
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OMO56350 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 230
               589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MELSSQHGFL EELLAPRRDS WTNFSTGVAT EFFPTGWNFD SFDENPSLAT SSNLAFVGFS  60
SNSSTQTTTE NQNPSSFECP FPDHHQPYPF PDGFTVPELD SSYTNNNETS PFPPQDQDYP  120
SMVDDEEFGL LSTDNQQHSL ELEERKGSCC KLEMEQTSNN FQGFNMGLFS EKKTKAKRLE  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LERIKKLQEE  240
ETEMNENNQV CLMSNLKELR PNEALVRNSP KFDIERKEID TRIDICCATK PGLLLSTVNT  300
LEALGLEIQQ CVISCFNDFS MQASCSEVAE QRTLISSEDI KQALFMKLQG YGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190197ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-83bHLH family protein