PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO56291
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family AP2
Protein Properties Length: 518aa    MW: 56864.6 Da    PI: 6.1223
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO56291genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.4e-11235291155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  OMO56291 235 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 291
               57*******************4444.2344336655.779999**************98 PP
2AP249.88.7e-16334385155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  OMO56291 334 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 385
               57****************988532...5************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    
MAPASNWLSF SLSPMEMLRS SSEPQFVSYE GSSAAASPHY LIDNFYANGW TNPKHQVFYP  60
EGEESQSKEA QPPAMAADES PILTSFNQAP KLEDFFGDSS SIVRYSDSQT ETQDSSLTQI  120
YDHGGSAYFN EHQDLKALTG FQAFSTNSGS EVDDSASMGR TQLTAVEFPG HSIESSGTEL  180
GFSNCPTAAG ALSLGVNQSC ENNSNTTGNE NSKAIVSVDS DCSKKIADTF GQRTSIYRGV  240
TRHRWTGRYE AHLWDNSCRR EGQARKGRQG GYDKEEKAAR AYDLAALKYW GPTATTNFPI  300
SNYTKELEEM KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD  360
LYLGTFATEE EAAEAYDIAA IKFRGVNAVT NFEMNRYDVE AIAKSSLPIG GAAKRLKLSL  420
ESEQKPAVNH EQQPQCSSNS NNISFASMQP MTAIPCGIPF DAAAAAAAFY QQNIYHHLHQ  480
TSNIGISEPP VSSSSTMATS LTVMPQPAEF FLWPHQSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AP2 family protein