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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OMO56181 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 329aa MW: 37058 Da PI: 4.6081 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.4 | 5.7e-19 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k
OMO56181 66 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 119
566899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.4 | 1.4e-41 | 65 | 157 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk + ++L++++e+L +e+ke
OMO56181 65 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKNSYETLKVNFDSLQHDNEALLKEIKE 157
69**************************************************************************************99987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 329 aa Download sequence |
MVGKLRQDSG YCTVVNLYNL VQVGLVLDKD ENSPRNNHIY SREFQSMLDG LDEEGCVEES 60 GHVSEKKRRL SVDQVKALEK NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT 120 KQLERDYGLL KNSYETLKVN FDSLQHDNEA LLKEIKELKA KLNGESCTES NLSVKEEVIV 180 PETDEKTLEK SDQPPESAEL INNSNGAAVL FLDMKDGSSD SDTSAILNED NNLNSSNSSS 240 SPNNAAISSS AVGILQSQHL LMSPTPTTTS SPSSMGCFNF SKSSYESSPP HTYVKMEEHN 300 FFSTADETCN FFSDEQPPSL HWYCPEQWN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 66 | 95 | KKRRLSVDQVKALEKNFEVENKLEPERKVK |
| 2 | 114 | 122 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G40060.1 | 1e-65 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO56181 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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