PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO56135

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 1108aa MW: 125740 Da PI: 6.2411

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO56135	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	183	3.4e-57	43	159	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 ++ ++rwl++ ei++iL+n++k++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvgg++vl+cyYah+een++fqrr+ywlL OMO56135 43 MEAQHRWLRPAEICEILKNYKKFHIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGGIDVLHCYYAHGEENENFQRRSYWLL 143 5569*********************************************************************************************** PP CG-1 103 eeelekivlvhylevk 118 e +l++ivlvhy+evk OMO56135 144 EDDLSHIVLVHYREVK 159 ***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MAFRIRRYHK FLHWDRKLLQ CMRLLRFQLT FIFCDADIEQ ILMEAQHRWL RPAEICEILK 60 NYKKFHIAPE PAHMPPSGSL FLFDRKVLRY FRKDGHNWRK KKDGKTVKEA HEKLKVGGID 120 VLHCYYAHGE ENENFQRRSY WLLEDDLSHI VLVHYREVKG NRTNFNRIKE NEEAMTYSQD 180 TEGRIPNSEM ESSLSSSFHP NNGQISSQTT DSTSLNSVQA SDYEDAESVY NHQASSQFQS 240 FLEPQQSAVV RIDGGFSDSY VPLSHSNDYN GKPSGSAFQL TQPGKDTEYN DAGLAYKPLK 300 NLDIASWEDV LGNLTTGVES VQYQPQFTST HDMMGQPFNN SFLKRQEFED QLPVQEGQAS 360 EGDSSHLSKW PLDQKLHPDL RFDIGYRIHE QEVNHLVHPD KQQNNPIKYN QQTEPSNGKD 420 GYVLKVDSQS YLTLEGKSIP SAMRQHLLDA SSADEGLKKL DSFNRWMSKE LGDVDESLMQ 480 PSSGADWDAV EGQNGVDVSV MPSQGQLDTF FLGPSLSQDQ LFSIIDFSPN WAYEGLETEV 540 LIMGKFLKSR DETKNYKWSC MFGEVEVPAQ VIADGVLRCH TPIHNAGRVP FYVTCSNRVA 600 CSEVREFEYR VFHIQDLEIV DHLNSNANYL IMRFDRLLCL GAGSPHPNTY DVTDVSEVSN 660 KINSLLKEDN EEWDQMLRPN SEEGFVLEKF KEQLLQKPLK EKLRVWLLQK VAEGGKGPSI 720 LDEDGQGVIH FAAALGCDWA LEPTIIAGVS VNFRDVNGWT ALHWAASYGR EHTVASLISL 780 GASPGALTDP TPEFPLGRTA ADLASANGHK GISGYLAEAD LSSQLVSLSL DKQDSNDNGD 840 SRADAIQKIL ERNTAPPGYG DTSDGTSMKD SLAAVRNATQ AAARIHQAFR VQSFQQRQLK 900 EYGDDKFGMS DERALSLIAV KSKKPGGHHD EHVHAAAIRI QNKFRGWKGR KEFLIIRQRI 960 VKIQAHVRGH QVRKNYRTIV WSVGILEKVI LRWRRKGSGL RGFKREALIE GPSMHAPPKE 1020 DDYDFLKQGR KQTEERLQKA LARVKSMAQN PAGRDQYSRM KNVVNEIQEK VMYDKAVMDV 1080 GVTDLDEDLI DLDLEKLLDD DIFMHTAF

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MAFRIRRYHK FLHWDRKLLQ CMRLLRFQLT FIFCDADIEQ ILMEAQHRWL RPAEICEILK  60
NYKKFHIAPE PAHMPPSGSL FLFDRKVLRY FRKDGHNWRK KKDGKTVKEA HEKLKVGGID  120
VLHCYYAHGE ENENFQRRSY WLLEDDLSHI VLVHYREVKG NRTNFNRIKE NEEAMTYSQD  180
TEGRIPNSEM ESSLSSSFHP NNGQISSQTT DSTSLNSVQA SDYEDAESVY NHQASSQFQS  240
FLEPQQSAVV RIDGGFSDSY VPLSHSNDYN GKPSGSAFQL TQPGKDTEYN DAGLAYKPLK  300
NLDIASWEDV LGNLTTGVES VQYQPQFTST HDMMGQPFNN SFLKRQEFED QLPVQEGQAS  360
EGDSSHLSKW PLDQKLHPDL RFDIGYRIHE QEVNHLVHPD KQQNNPIKYN QQTEPSNGKD  420
GYVLKVDSQS YLTLEGKSIP SAMRQHLLDA SSADEGLKKL DSFNRWMSKE LGDVDESLMQ  480
PSSGADWDAV EGQNGVDVSV MPSQGQLDTF FLGPSLSQDQ LFSIIDFSPN WAYEGLETEV  540
LIMGKFLKSR DETKNYKWSC MFGEVEVPAQ VIADGVLRCH TPIHNAGRVP FYVTCSNRVA  600
CSEVREFEYR VFHIQDLEIV DHLNSNANYL IMRFDRLLCL GAGSPHPNTY DVTDVSEVSN  660
KINSLLKEDN EEWDQMLRPN SEEGFVLEKF KEQLLQKPLK EKLRVWLLQK VAEGGKGPSI  720
LDEDGQGVIH FAAALGCDWA LEPTIIAGVS VNFRDVNGWT ALHWAASYGR EHTVASLISL  780
GASPGALTDP TPEFPLGRTA ADLASANGHK GISGYLAEAD LSSQLVSLSL DKQDSNDNGD  840
SRADAIQKIL ERNTAPPGYG DTSDGTSMKD SLAAVRNATQ AAARIHQAFR VQSFQQRQLK  900
EYGDDKFGMS DERALSLIAV KSKKPGGHHD EHVHAAAIRI QNKFRGWKGR KEFLIIRQRI  960
VKIQAHVRGH QVRKNYRTIV WSVGILEKVI LRWRRKGSGL RGFKREALIE GPSMHAPPKE  1020
DDYDFLKQGR KQTEERLQKA LARVKSMAQN PAGRDQYSRM KNVVNEIQEK VMYDKAVMDV  1080
GVTDLDEDLI DLDLEKLLDD DIFMHTAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO56135